Hb_000160_240

Information

Type -
Description -
Location Contig160: 219305-221964
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08660g
description POPTRDRAFT_648121; hypothetical protein
nr
ID XP_012089911.1
description PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
swissprot
ID Q6NLC8
description Uncharacterized protein At1g66480 OS=Arabidopsis thaliana GN=At1g66480 PE=2 SV=1
trembl
ID A0A067JIK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02495 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14332: 219507-222206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_240 0.0 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
2 Hb_000976_290 0.1779049148 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
3 Hb_006026_010 0.1804796865 - - PREDICTED: cyclin-dependent kinase inhibitor 3-like [Jatropha curcas]
4 Hb_002273_080 0.1910478753 - - geranylgeranyl reductase [Monoraphidium neglectum]
5 Hb_002686_280 0.1994043489 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_002273_050 0.2003320894 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
7 Hb_020805_170 0.2013289353 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
8 Hb_042175_010 0.2020290146 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
9 Hb_005147_040 0.2041649867 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
10 Hb_007125_040 0.2085026227 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
11 Hb_003371_120 0.2087658745 - - hypothetical protein JCGZ_05278 [Jatropha curcas]
12 Hb_001183_010 0.2143715197 - - -
13 Hb_001863_150 0.215257163 - - VQ motif-containing family protein [Populus trichocarpa]
14 Hb_000645_240 0.2232712681 - - AMP dependent ligase, putative [Ricinus communis]
15 Hb_000997_110 0.224963135 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_000140_410 0.2272935324 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
17 Hb_000866_090 0.229663901 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
18 Hb_003125_020 0.2300656502 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
19 Hb_002235_240 0.2307480304 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
20 Hb_011930_070 0.2311221552 - - PREDICTED: probable AMP deaminase [Jatropha curcas]

Gene co-expression network

sample Hb_000160_240 Hb_000160_240 Hb_000976_290 Hb_000976_290 Hb_000160_240--Hb_000976_290 Hb_006026_010 Hb_006026_010 Hb_000160_240--Hb_006026_010 Hb_002273_080 Hb_002273_080 Hb_000160_240--Hb_002273_080 Hb_002686_280 Hb_002686_280 Hb_000160_240--Hb_002686_280 Hb_002273_050 Hb_002273_050 Hb_000160_240--Hb_002273_050 Hb_020805_170 Hb_020805_170 Hb_000160_240--Hb_020805_170 Hb_000062_080 Hb_000062_080 Hb_000976_290--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_000976_290--Hb_127599_010 Hb_003494_060 Hb_003494_060 Hb_000976_290--Hb_003494_060 Hb_000010_350 Hb_000010_350 Hb_000976_290--Hb_000010_350 Hb_002026_060 Hb_002026_060 Hb_000976_290--Hb_002026_060 Hb_001141_360 Hb_001141_360 Hb_000976_290--Hb_001141_360 Hb_003371_120 Hb_003371_120 Hb_006026_010--Hb_003371_120 Hb_000997_110 Hb_000997_110 Hb_006026_010--Hb_000997_110 Hb_006026_010--Hb_002273_050 Hb_006026_010--Hb_000976_290 Hb_000120_970 Hb_000120_970 Hb_006026_010--Hb_000120_970 Hb_002273_080--Hb_002273_050 Hb_000215_410 Hb_000215_410 Hb_002273_080--Hb_000215_410 Hb_002273_080--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_080--Hb_129204_060 Hb_001269_690 Hb_001269_690 Hb_002273_080--Hb_001269_690 Hb_001269_040 Hb_001269_040 Hb_002273_080--Hb_001269_040 Hb_002686_280--Hb_002273_050 Hb_002235_240 Hb_002235_240 Hb_002686_280--Hb_002235_240 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010 Hb_003849_260 Hb_003849_260 Hb_002686_280--Hb_003849_260 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002273_050--Hb_001269_690 Hb_002273_050--Hb_129204_060 Hb_008066_070 Hb_008066_070 Hb_020805_170--Hb_008066_070 Hb_000140_410 Hb_000140_410 Hb_020805_170--Hb_000140_410 Hb_001114_070 Hb_001114_070 Hb_020805_170--Hb_001114_070 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_000905_170 Hb_000905_170 Hb_020805_170--Hb_000905_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.06743 64.0146 6.2483 4.13589 7.83209 8.96365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.08379 21.0652 1.79452 36.2544 3.40694

CAGE analysis