Hb_042175_010

Information

Type -
Description -
Location Contig42175: 4932-8997
Sequence    

Annotation

kegg
ID mtr:MTR_8g092060
description N-acetyltransferase-like protein
nr
ID KDO50465.1
description hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
swissprot
ID Q9XIK4
description UPF0202 protein At1g10490 OS=Arabidopsis thaliana GN=At1g10490 PE=2 SV=2
trembl
ID A0A067E992
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0016721mg PE=4 SV=1
Gene Ontology
ID GO:0008080
description upf0202 protein at1g10490-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41637: 5017-7444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042175_010 0.0 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
2 Hb_003060_090 0.1414392046 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
3 Hb_001141_360 0.1451667647 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_002686_280 0.1473605317 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_001863_150 0.1482668701 - - VQ motif-containing family protein [Populus trichocarpa]
6 Hb_001865_060 0.1538289979 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
7 Hb_000010_350 0.1547629902 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
8 Hb_000123_350 0.1551040057 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
9 Hb_001511_110 0.1562025638 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
10 Hb_000976_290 0.156889171 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
11 Hb_000062_080 0.1593835108 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
12 Hb_002235_240 0.1602411001 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
13 Hb_127599_010 0.160893632 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
14 Hb_000735_160 0.1615203327 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
15 Hb_000243_380 0.1653355706 - - PREDICTED: histone H1 [Jatropha curcas]
16 Hb_003849_260 0.1656403652 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
17 Hb_001377_250 0.1688175987 - - dynamin, putative [Ricinus communis]
18 Hb_002485_040 0.1694361376 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
19 Hb_000802_190 0.1710335763 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
20 Hb_001225_090 0.1711135192 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_042175_010 Hb_042175_010 Hb_003060_090 Hb_003060_090 Hb_042175_010--Hb_003060_090 Hb_001141_360 Hb_001141_360 Hb_042175_010--Hb_001141_360 Hb_002686_280 Hb_002686_280 Hb_042175_010--Hb_002686_280 Hb_001863_150 Hb_001863_150 Hb_042175_010--Hb_001863_150 Hb_001865_060 Hb_001865_060 Hb_042175_010--Hb_001865_060 Hb_000010_350 Hb_000010_350 Hb_042175_010--Hb_000010_350 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_002273_050 Hb_002273_050 Hb_002686_280--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002686_280--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_002686_280--Hb_002235_240 Hb_001269_040 Hb_001269_040 Hb_002686_280--Hb_001269_040 Hb_003849_260 Hb_003849_260 Hb_002686_280--Hb_003849_260 Hb_001863_150--Hb_002235_240 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_001865_060--Hb_012725_040 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_000010_350--Hb_000062_080 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.532062 2.26229 0.31315 0.13872 0.363289 0.453124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.336325 0.330482 0.117562 0.753934 0.390809

CAGE analysis