Hb_004724_130

Information

Type -
Description -
Location Contig4724: 116021-120033
Sequence    

Annotation

kegg
ID rcu:RCOM_1281640
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012084583.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
swissprot
ID Q9ZQG9
description Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500 PE=1 SV=2
trembl
ID A0A067K6F7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20223 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta-glucosidase 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44335: 116144-119900
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_130 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
2 Hb_000175_500 0.1003226823 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]
3 Hb_001863_150 0.1481263915 - - VQ motif-containing family protein [Populus trichocarpa]
4 Hb_001231_080 0.1489625233 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
5 Hb_002235_240 0.1533549461 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
6 Hb_000538_190 0.1644595817 - - PREDICTED: protein DJ-1 homolog D [Jatropha curcas]
7 Hb_001141_360 0.1658705714 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_001865_060 0.1662086764 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
9 Hb_003525_020 0.1813662728 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002686_280 0.1820483005 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_004218_090 0.184201403 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_009897_020 0.1847050072 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_005147_040 0.1855298203 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
14 Hb_001369_770 0.1868489949 - - PREDICTED: AT-hook motif nuclear-localized protein 6-like [Jatropha curcas]
15 Hb_129204_060 0.187357743 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
16 Hb_042175_010 0.1878166316 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
17 Hb_005400_040 0.1902808987 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
18 Hb_009838_060 0.1915594643 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_080 0.193654959 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
20 Hb_131956_010 0.1963177276 - - hypothetical protein JCGZ_19531 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_130 Hb_004724_130 Hb_000175_500 Hb_000175_500 Hb_004724_130--Hb_000175_500 Hb_001863_150 Hb_001863_150 Hb_004724_130--Hb_001863_150 Hb_001231_080 Hb_001231_080 Hb_004724_130--Hb_001231_080 Hb_002235_240 Hb_002235_240 Hb_004724_130--Hb_002235_240 Hb_000538_190 Hb_000538_190 Hb_004724_130--Hb_000538_190 Hb_001141_360 Hb_001141_360 Hb_004724_130--Hb_001141_360 Hb_000175_500--Hb_001231_080 Hb_004218_090 Hb_004218_090 Hb_000175_500--Hb_004218_090 Hb_005000_300 Hb_005000_300 Hb_000175_500--Hb_005000_300 Hb_000175_500--Hb_001141_360 Hb_000175_500--Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060 Hb_000836_370 Hb_000836_370 Hb_001231_080--Hb_000836_370 Hb_001231_080--Hb_005000_300 Hb_000056_300 Hb_000056_300 Hb_001231_080--Hb_000056_300 Hb_002942_110 Hb_002942_110 Hb_001231_080--Hb_002942_110 Hb_128695_030 Hb_128695_030 Hb_001231_080--Hb_128695_030 Hb_004195_120 Hb_004195_120 Hb_001231_080--Hb_004195_120 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_000836_120 Hb_000836_120 Hb_002235_240--Hb_000836_120 Hb_003849_260 Hb_003849_260 Hb_002235_240--Hb_003849_260 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_001369_770 Hb_001369_770 Hb_000538_190--Hb_001369_770 Hb_020178_050 Hb_020178_050 Hb_000538_190--Hb_020178_050 Hb_003525_020 Hb_003525_020 Hb_000538_190--Hb_003525_020 Hb_000538_190--Hb_002942_110 Hb_004976_060 Hb_004976_060 Hb_000538_190--Hb_004976_060 Hb_089100_040 Hb_089100_040 Hb_000538_190--Hb_089100_040 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.985 64.8742 10.3167 5.9679 5.95398 10.5078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05117 2.93868 3.40057 17.4878 2.17723

CAGE analysis