Hb_003849_260

Information

Type -
Description -
Location Contig3849: 194748-199653
Sequence    

Annotation

kegg
ID pop:POPTR_0010s05640g
description POPTRDRAFT_230517; hypothetical protein
nr
ID XP_012085485.1
description PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JRS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17819 PE=4 SV=1
Gene Ontology
ID GO:0005515
description octicosapeptide phox bem1p family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38786: 198501-199607 , PASA_asmbl_38787: 197653-199607 , PASA_asmbl_38788: 194894-199607 , PASA_asmbl_38790: 197653-198492 , PASA_asmbl_38792: 195769-196013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003849_260 0.0 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
2 Hb_002235_240 0.1195266308 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
3 Hb_000836_120 0.1324261761 - - syntaxin, putative [Ricinus communis]
4 Hb_001141_360 0.1426245063 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
5 Hb_004800_190 0.1434621466 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
6 Hb_001584_220 0.1482991265 - - galactinol synthase [Manihot esculenta]
7 Hb_002686_280 0.1527771374 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_129204_060 0.1547208185 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
9 Hb_001225_090 0.1591597885 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
10 Hb_012226_010 0.1607560926 - - PREDICTED: protein DGCR14 [Jatropha curcas]
11 Hb_003633_140 0.1609035288 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
12 Hb_042175_010 0.1656403652 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
13 Hb_002609_090 0.171715885 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_005656_140 0.1717728485 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
15 Hb_002273_050 0.1765340143 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
16 Hb_001638_040 0.1794861389 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
17 Hb_154471_010 0.1867573647 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_009897_020 0.1892706594 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_001865_060 0.1904104988 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
20 Hb_003494_060 0.1930455188 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003849_260 Hb_003849_260 Hb_002235_240 Hb_002235_240 Hb_003849_260--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_003849_260--Hb_000836_120 Hb_001141_360 Hb_001141_360 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220 Hb_002686_280 Hb_002686_280 Hb_003849_260--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002235_240--Hb_129204_060 Hb_002235_240--Hb_000836_120 Hb_000215_410 Hb_000215_410 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150 Hb_002273_050 Hb_002273_050 Hb_000836_120--Hb_002273_050 Hb_000836_120--Hb_129204_060 Hb_000836_120--Hb_000215_410 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_001865_060 Hb_001865_060 Hb_001141_360--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_009897_020 Hb_009897_020 Hb_004800_190--Hb_009897_020 Hb_004800_190--Hb_001141_360 Hb_004800_190--Hb_001865_060 Hb_162074_010 Hb_162074_010 Hb_004800_190--Hb_162074_010 Hb_004800_190--Hb_003494_060 Hb_003633_140 Hb_003633_140 Hb_001584_220--Hb_003633_140 Hb_001999_250 Hb_001999_250 Hb_001584_220--Hb_001999_250 Hb_028795_010 Hb_028795_010 Hb_001584_220--Hb_028795_010 Hb_001584_220--Hb_012226_010 Hb_001584_220--Hb_001141_360 Hb_002686_280--Hb_002273_050 Hb_002273_080 Hb_002273_080 Hb_002686_280--Hb_002273_080 Hb_002686_280--Hb_002235_240 Hb_001269_040 Hb_001269_040 Hb_002686_280--Hb_001269_040 Hb_042175_010 Hb_042175_010 Hb_002686_280--Hb_042175_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
109.301 625.773 29.2355 30.2053 131.12 131.134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
87.5767 45.1464 21.6813 111.729 25.2929

CAGE analysis