Hb_004800_190

Information

Type transcription factor
Description TF Family: GRAS
Location Contig4800: 153268-155450
Sequence    

Annotation

kegg
ID rcu:RCOM_0536880
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_012075848.1
description PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
swissprot
ID Q9FL03
description Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=2 SV=1
trembl
ID A0A067KR64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11271 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_190 0.0 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
2 Hb_009897_020 0.0952689184 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_001141_360 0.1243157501 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
4 Hb_003849_260 0.1434621466 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
5 Hb_001865_060 0.1445901781 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
6 Hb_162074_010 0.1455822377 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
7 Hb_003494_060 0.1462191953 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
8 Hb_000010_350 0.1557686936 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
9 Hb_002760_040 0.1594435559 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
10 Hb_012725_040 0.168455938 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
11 Hb_001514_060 0.1754890662 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
12 Hb_001489_120 0.1776792448 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
13 Hb_006111_030 0.1785842125 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
14 Hb_002485_040 0.1792362454 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
15 Hb_011885_010 0.1793699937 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
16 Hb_005656_140 0.1794842364 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
17 Hb_001258_150 0.1810407612 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
18 Hb_000488_020 0.1837938632 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
19 Hb_033642_070 0.1851015505 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
20 Hb_138575_010 0.1853062869 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_004800_190 Hb_004800_190 Hb_009897_020 Hb_009897_020 Hb_004800_190--Hb_009897_020 Hb_001141_360 Hb_001141_360 Hb_004800_190--Hb_001141_360 Hb_003849_260 Hb_003849_260 Hb_004800_190--Hb_003849_260 Hb_001865_060 Hb_001865_060 Hb_004800_190--Hb_001865_060 Hb_162074_010 Hb_162074_010 Hb_004800_190--Hb_162074_010 Hb_003494_060 Hb_003494_060 Hb_004800_190--Hb_003494_060 Hb_009897_020--Hb_162074_010 Hb_002760_040 Hb_002760_040 Hb_009897_020--Hb_002760_040 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_009897_020--Hb_001141_360 Hb_001141_360--Hb_001865_060 Hb_001141_360--Hb_003494_060 Hb_000062_080 Hb_000062_080 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_012725_040 Hb_012725_040 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010 Hb_002235_240 Hb_002235_240 Hb_003849_260--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_003849_260--Hb_000836_120 Hb_003849_260--Hb_001141_360 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220 Hb_002686_280 Hb_002686_280 Hb_003849_260--Hb_002686_280 Hb_001865_060--Hb_012725_040 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_162074_010--Hb_012725_040 Hb_185513_010 Hb_185513_010 Hb_162074_010--Hb_185513_010 Hb_056012_010 Hb_056012_010 Hb_162074_010--Hb_056012_010 Hb_162074_010--Hb_001865_060 Hb_003494_060--Hb_012725_040 Hb_000483_040 Hb_000483_040 Hb_003494_060--Hb_000483_040 Hb_009838_060 Hb_009838_060 Hb_003494_060--Hb_009838_060 Hb_003494_060--Hb_000062_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.1326 340.463 20.1951 24.5277 47.0534 39.5069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4957 10.2269 10.8918 34.9995 30.8377

CAGE analysis