Hb_009897_020

Information

Type -
Description -
Location Contig9897: 2825-11884
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64699: 1156-3625 , PASA_asmbl_64701: 10085-10942 , PASA_asmbl_64702: 10945-11162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009897_020 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_162074_010 0.0942158961 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_004800_190 0.0952689184 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
4 Hb_002760_040 0.1149044234 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
5 Hb_001865_060 0.1304915444 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
6 Hb_002686_400 0.1365802447 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
7 Hb_001141_360 0.1366780348 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
8 Hb_003494_060 0.1405322678 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
9 Hb_012725_040 0.1430955843 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_185513_010 0.1435304204 - - conserved hypothetical protein [Ricinus communis]
11 Hb_138575_010 0.1437659381 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_033642_070 0.14844489 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
13 Hb_000010_350 0.1527921291 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
14 Hb_001514_060 0.1533080541 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
15 Hb_056012_010 0.1535639194 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
16 Hb_003155_020 0.1547137952 - - Rpp4C3 [Medicago truncatula]
17 Hb_011885_010 0.1549315533 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_001489_120 0.1630125067 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
19 Hb_005656_140 0.1677858123 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
20 Hb_001258_150 0.1706036892 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]

Gene co-expression network

sample Hb_009897_020 Hb_009897_020 Hb_162074_010 Hb_162074_010 Hb_009897_020--Hb_162074_010 Hb_004800_190 Hb_004800_190 Hb_009897_020--Hb_004800_190 Hb_002760_040 Hb_002760_040 Hb_009897_020--Hb_002760_040 Hb_001865_060 Hb_001865_060 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_012725_040 Hb_012725_040 Hb_162074_010--Hb_012725_040 Hb_185513_010 Hb_185513_010 Hb_162074_010--Hb_185513_010 Hb_056012_010 Hb_056012_010 Hb_162074_010--Hb_056012_010 Hb_162074_010--Hb_004800_190 Hb_162074_010--Hb_001865_060 Hb_004800_190--Hb_001141_360 Hb_003849_260 Hb_003849_260 Hb_004800_190--Hb_003849_260 Hb_004800_190--Hb_001865_060 Hb_003494_060 Hb_003494_060 Hb_004800_190--Hb_003494_060 Hb_005656_140 Hb_005656_140 Hb_002760_040--Hb_005656_140 Hb_002760_040--Hb_003494_060 Hb_002760_040--Hb_002686_400 Hb_117895_010 Hb_117895_010 Hb_002760_040--Hb_117895_010 Hb_003155_020 Hb_003155_020 Hb_002760_040--Hb_003155_020 Hb_001865_060--Hb_001141_360 Hb_001865_060--Hb_012725_040 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310 Hb_000010_350 Hb_000010_350 Hb_002686_400--Hb_000010_350 Hb_033642_070 Hb_033642_070 Hb_002686_400--Hb_033642_070 Hb_000866_370 Hb_000866_370 Hb_002686_400--Hb_000866_370 Hb_006738_060 Hb_006738_060 Hb_002686_400--Hb_006738_060 Hb_001141_360--Hb_003494_060 Hb_001141_360--Hb_000062_080 Hb_003120_050 Hb_003120_050 Hb_001141_360--Hb_003120_050 Hb_001141_360--Hb_012725_040 Hb_012226_010 Hb_012226_010 Hb_001141_360--Hb_012226_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.06516 37.3836 2.55315 4.72744 4.25138 4.9413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.15206 0.931749 1.51496 4.89191 2.81578

CAGE analysis