Hb_162074_010

Information

Type -
Description -
Location Contig162074: 587-11111
Sequence    

Annotation

kegg
ID pop:POPTR_0005s063002
description POPTRDRAFT_558400; hypothetical protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID B9H474
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s063002g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_162074_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_009897_020 0.0942158961 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_012725_040 0.1254920707 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_185513_010 0.1371681428 - - conserved hypothetical protein [Ricinus communis]
5 Hb_056012_010 0.1399810449 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_004800_190 0.1455822377 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
7 Hb_001865_060 0.1472621917 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
8 Hb_001514_060 0.1480231859 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
9 Hb_011885_010 0.1585488936 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_002760_040 0.15916601 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
11 Hb_001258_150 0.1599986146 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
12 Hb_000960_010 0.1615669109 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_002774_150 0.1621052145 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
14 Hb_126506_010 0.1636814428 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_009897_010 0.1640311677 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_001489_120 0.1644150287 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
17 Hb_003155_020 0.1653621244 - - Rpp4C3 [Medicago truncatula]
18 Hb_001662_170 0.1662973095 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
19 Hb_006111_030 0.1695155234 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
20 Hb_033642_070 0.171254461 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]

Gene co-expression network

sample Hb_162074_010 Hb_162074_010 Hb_009897_020 Hb_009897_020 Hb_162074_010--Hb_009897_020 Hb_012725_040 Hb_012725_040 Hb_162074_010--Hb_012725_040 Hb_185513_010 Hb_185513_010 Hb_162074_010--Hb_185513_010 Hb_056012_010 Hb_056012_010 Hb_162074_010--Hb_056012_010 Hb_004800_190 Hb_004800_190 Hb_162074_010--Hb_004800_190 Hb_001865_060 Hb_001865_060 Hb_162074_010--Hb_001865_060 Hb_009897_020--Hb_004800_190 Hb_002760_040 Hb_002760_040 Hb_009897_020--Hb_002760_040 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_012725_040--Hb_185513_010 Hb_012725_040--Hb_001865_060 Hb_006111_030 Hb_006111_030 Hb_012725_040--Hb_006111_030 Hb_001258_150 Hb_001258_150 Hb_012725_040--Hb_001258_150 Hb_003494_060 Hb_003494_060 Hb_012725_040--Hb_003494_060 Hb_012725_040--Hb_001141_360 Hb_003637_020 Hb_003637_020 Hb_185513_010--Hb_003637_020 Hb_103788_010 Hb_103788_010 Hb_185513_010--Hb_103788_010 Hb_185513_010--Hb_056012_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_185513_010--Hb_001865_060 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_056012_010--Hb_001258_150 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_004800_190--Hb_001141_360 Hb_003849_260 Hb_003849_260 Hb_004800_190--Hb_003849_260 Hb_004800_190--Hb_001865_060 Hb_004800_190--Hb_003494_060 Hb_001865_060--Hb_001141_360 Hb_000062_080 Hb_000062_080 Hb_001865_060--Hb_000062_080 Hb_002485_040 Hb_002485_040 Hb_001865_060--Hb_002485_040 Hb_001865_060--Hb_003494_060 Hb_004032_310 Hb_004032_310 Hb_001865_060--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77193 14.3351 1.67139 2.50582 1.90229 2.59642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.390145 0.135454 0.363957 1.28433 1.29555

CAGE analysis