Hb_002686_400

Information

Type -
Description -
Location Contig2686: 311925-314811
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04500g
description hypothetical protein
nr
ID XP_006371139.1
description hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
swissprot
ID Q9SRT0
description U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9 PE=1 SV=1
trembl
ID U5FGD0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04500g PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28051: 312428-312897 , PASA_asmbl_28052: 312972-313093 , PASA_asmbl_28053: 314366-314770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_400 0.0 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
2 Hb_009897_020 0.1365802447 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_000010_350 0.1450302499 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
4 Hb_033642_070 0.1453625343 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
5 Hb_002760_040 0.1461969029 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
6 Hb_000866_370 0.1468362813 - - synaptotagmin, putative [Ricinus communis]
7 Hb_006738_060 0.1495257718 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004466_070 0.1569866153 - - hypothetical protein RCOM_1447500 [Ricinus communis]
9 Hb_011310_200 0.1594025439 - - grr1, plant, putative [Ricinus communis]
10 Hb_117895_010 0.1603197846 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
11 Hb_000984_100 0.1603798423 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_001248_110 0.1634352438 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_004976_040 0.1651099406 - - PREDICTED: protein HASTY 1 [Jatropha curcas]
14 Hb_001544_080 0.1652246997 - - PREDICTED: 66 kDa stress protein-like [Jatropha curcas]
15 Hb_089100_040 0.1697985225 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
16 Hb_000809_080 0.1723410688 - - 50S ribosomal protein L25, putative [Ricinus communis]
17 Hb_001608_030 0.1737322102 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
18 Hb_000805_230 0.1780437392 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
19 Hb_158696_010 0.1781008591 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
20 Hb_138575_010 0.1781299803 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_002686_400 Hb_002686_400 Hb_009897_020 Hb_009897_020 Hb_002686_400--Hb_009897_020 Hb_000010_350 Hb_000010_350 Hb_002686_400--Hb_000010_350 Hb_033642_070 Hb_033642_070 Hb_002686_400--Hb_033642_070 Hb_002760_040 Hb_002760_040 Hb_002686_400--Hb_002760_040 Hb_000866_370 Hb_000866_370 Hb_002686_400--Hb_000866_370 Hb_006738_060 Hb_006738_060 Hb_002686_400--Hb_006738_060 Hb_162074_010 Hb_162074_010 Hb_009897_020--Hb_162074_010 Hb_004800_190 Hb_004800_190 Hb_009897_020--Hb_004800_190 Hb_009897_020--Hb_002760_040 Hb_001865_060 Hb_001865_060 Hb_009897_020--Hb_001865_060 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_000062_080 Hb_000062_080 Hb_000010_350--Hb_000062_080 Hb_000010_350--Hb_001865_060 Hb_000010_350--Hb_000866_370 Hb_004108_170 Hb_004108_170 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_003126_020 Hb_003126_020 Hb_033642_070--Hb_003126_020 Hb_158696_010 Hb_158696_010 Hb_033642_070--Hb_158696_010 Hb_001863_450 Hb_001863_450 Hb_033642_070--Hb_001863_450 Hb_001662_170 Hb_001662_170 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_004466_070 Hb_004466_070 Hb_033642_070--Hb_004466_070 Hb_005656_140 Hb_005656_140 Hb_002760_040--Hb_005656_140 Hb_003494_060 Hb_003494_060 Hb_002760_040--Hb_003494_060 Hb_117895_010 Hb_117895_010 Hb_002760_040--Hb_117895_010 Hb_003155_020 Hb_003155_020 Hb_002760_040--Hb_003155_020 Hb_000866_370--Hb_117895_010 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_000984_100 Hb_000984_100 Hb_006738_060--Hb_000984_100 Hb_057079_020 Hb_057079_020 Hb_006738_060--Hb_057079_020 Hb_007618_010 Hb_007618_010 Hb_006738_060--Hb_007618_010 Hb_000189_120 Hb_000189_120 Hb_006738_060--Hb_000189_120 Hb_001608_030 Hb_001608_030 Hb_006738_060--Hb_001608_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06743 23.0477 1.28914 4.1933 2.9158 1.75858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.483507 0.640709 1.47619 5.4306 2.78331

CAGE analysis