Hb_003126_020

Information

Type -
Description -
Location Contig3126: 14451-17026
Sequence    

Annotation

kegg
ID rcu:RCOM_0573130
description Oligopeptide transporter, putative
nr
ID XP_002529653.1
description Oligopeptide transporter, putative [Ricinus communis]
swissprot
ID O82485
description Oligopeptide transporter 7 OS=Arabidopsis thaliana GN=OPT7 PE=2 SV=1
trembl
ID B9SUI4
description Oligopeptide transporter, putative OS=Ricinus communis GN=RCOM_0573130 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33079: 3459-15225 , PASA_asmbl_33080: 15542-16222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003126_020 0.0 - - Oligopeptide transporter, putative [Ricinus communis]
2 Hb_033642_070 0.0898954648 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
3 Hb_001053_200 0.1356246086 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_001662_170 0.1358672641 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_002233_070 0.1372983255 - - unnamed protein product [Vitis vinifera]
6 Hb_158696_010 0.1424064145 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
7 Hb_004106_010 0.1509697285 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
8 Hb_004032_310 0.1518090593 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
9 Hb_056012_010 0.1549985322 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_003752_120 0.15713704 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
11 Hb_008103_100 0.1578210576 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
12 Hb_011689_100 0.1578729836 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
13 Hb_002471_020 0.1627902354 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
14 Hb_000803_060 0.1638880509 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
15 Hb_012787_040 0.1640226317 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
16 Hb_002477_120 0.1673763142 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
17 Hb_003226_110 0.1679161207 - - PREDICTED: exocyst complex component SEC15B [Jatropha curcas]
18 Hb_000189_470 0.1695962638 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
19 Hb_089100_040 0.1720978725 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
20 Hb_002793_060 0.1721115789 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Populus euphratica]

Gene co-expression network

sample Hb_003126_020 Hb_003126_020 Hb_033642_070 Hb_033642_070 Hb_003126_020--Hb_033642_070 Hb_001053_200 Hb_001053_200 Hb_003126_020--Hb_001053_200 Hb_001662_170 Hb_001662_170 Hb_003126_020--Hb_001662_170 Hb_002233_070 Hb_002233_070 Hb_003126_020--Hb_002233_070 Hb_158696_010 Hb_158696_010 Hb_003126_020--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_003126_020--Hb_004106_010 Hb_033642_070--Hb_158696_010 Hb_001863_450 Hb_001863_450 Hb_033642_070--Hb_001863_450 Hb_033642_070--Hb_001662_170 Hb_056012_010 Hb_056012_010 Hb_033642_070--Hb_056012_010 Hb_004466_070 Hb_004466_070 Hb_033642_070--Hb_004466_070 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001053_200--Hb_001662_170 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_001662_170--Hb_004106_010 Hb_012787_040 Hb_012787_040 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_011689_100 Hb_011689_100 Hb_002233_070--Hb_011689_100 Hb_000117_060 Hb_000117_060 Hb_002233_070--Hb_000117_060 Hb_002233_070--Hb_056012_010 Hb_002233_070--Hb_001662_170 Hb_009476_150 Hb_009476_150 Hb_002233_070--Hb_009476_150 Hb_158696_010--Hb_004106_010 Hb_158696_010--Hb_012787_040 Hb_158696_010--Hb_001662_170 Hb_158696_010--Hb_003752_120 Hb_093177_010 Hb_093177_010 Hb_158696_010--Hb_093177_010 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_004106_010--Hb_093177_010 Hb_004106_010--Hb_012787_040 Hb_004106_010--Hb_001053_200 Hb_004106_010--Hb_008103_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43201 6.73025 1.29267 2.05163 0.716914 0.440592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.331976 0.335834 0.0353369 1.55203 1.26006

CAGE analysis