Hb_009476_150

Information

Type transcription factor
Description TF Family: MYB
Location Contig9476: 152904-153662
Sequence    

Annotation

kegg
ID vvi:100260493
description myb-related protein B
nr
ID XP_012090668.1
description PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID A0A067LKB3
description MYB family protein OS=Jatropha curcas GN=JCGZ_01234 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63310: 152827-153270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_150 0.0 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
2 Hb_000438_150 0.1693823141 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
3 Hb_012258_020 0.1753312972 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_002233_070 0.1763420199 - - unnamed protein product [Vitis vinifera]
5 Hb_001357_280 0.1833800248 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
6 Hb_006286_010 0.1898436114 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
7 Hb_000732_240 0.1937364225 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
8 Hb_005056_100 0.2092380459 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
9 Hb_000099_190 0.2094547177 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
10 Hb_035761_010 0.2099779094 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
11 Hb_000936_040 0.2115663242 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
12 Hb_000117_060 0.2179716455 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
13 Hb_029689_010 0.2180743882 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_101370_010 0.2180853374 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
15 Hb_000594_110 0.2184496138 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
16 Hb_017434_070 0.2209297896 - - transcription factor, putative [Ricinus communis]
17 Hb_002196_010 0.2248535077 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
18 Hb_003913_030 0.2272057627 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
19 Hb_025964_040 0.2304386136 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
20 Hb_003531_040 0.2322124069 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009476_150 Hb_009476_150 Hb_000438_150 Hb_000438_150 Hb_009476_150--Hb_000438_150 Hb_012258_020 Hb_012258_020 Hb_009476_150--Hb_012258_020 Hb_002233_070 Hb_002233_070 Hb_009476_150--Hb_002233_070 Hb_001357_280 Hb_001357_280 Hb_009476_150--Hb_001357_280 Hb_006286_010 Hb_006286_010 Hb_009476_150--Hb_006286_010 Hb_000732_240 Hb_000732_240 Hb_009476_150--Hb_000732_240 Hb_000099_190 Hb_000099_190 Hb_000438_150--Hb_000099_190 Hb_000438_150--Hb_000732_240 Hb_048944_020 Hb_048944_020 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_000117_060 Hb_000117_060 Hb_012258_020--Hb_000117_060 Hb_005568_130 Hb_005568_130 Hb_012258_020--Hb_005568_130 Hb_041895_040 Hb_041895_040 Hb_012258_020--Hb_041895_040 Hb_003637_020 Hb_003637_020 Hb_012258_020--Hb_003637_020 Hb_000594_110 Hb_000594_110 Hb_012258_020--Hb_000594_110 Hb_001518_060 Hb_001518_060 Hb_012258_020--Hb_001518_060 Hb_003126_020 Hb_003126_020 Hb_002233_070--Hb_003126_020 Hb_011689_100 Hb_011689_100 Hb_002233_070--Hb_011689_100 Hb_002233_070--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_002233_070--Hb_056012_010 Hb_001662_170 Hb_001662_170 Hb_002233_070--Hb_001662_170 Hb_000532_150 Hb_000532_150 Hb_001357_280--Hb_000532_150 Hb_017159_010 Hb_017159_010 Hb_001357_280--Hb_017159_010 Hb_001357_280--Hb_000594_110 Hb_001357_280--Hb_000732_240 Hb_000284_170 Hb_000284_170 Hb_001357_280--Hb_000284_170 Hb_002250_050 Hb_002250_050 Hb_001357_280--Hb_002250_050 Hb_014361_050 Hb_014361_050 Hb_006286_010--Hb_014361_050 Hb_102437_010 Hb_102437_010 Hb_006286_010--Hb_102437_010 Hb_006286_010--Hb_002196_010 Hb_000997_010 Hb_000997_010 Hb_006286_010--Hb_000997_010 Hb_006286_010--Hb_000438_150 Hb_000732_240--Hb_000099_190 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_000732_240--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000732_240--Hb_049915_010 Hb_000732_240--Hb_017159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.798023 1.97375 0.904168 1.71366 0.208488 0.328735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0724104 0 0 0.0923513 0.227319

CAGE analysis