Hb_048944_020

Information

Type -
Description -
Location Contig48944: 22938-26826
Sequence    

Annotation

kegg
ID pop:POPTR_0014s002002
description hypothetical protein
nr
ID XP_006374723.1
description hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
swissprot
ID Q9FKZ0
description Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1
trembl
ID U5FN98
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s002002g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45178: 25905-26605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_048944_020 0.0 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
2 Hb_101370_010 0.160199635 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_035761_010 0.2003594967 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
4 Hb_000438_150 0.203257701 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
5 Hb_005056_100 0.2110215274 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
6 Hb_000099_190 0.2174038559 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
7 Hb_000189_070 0.2176708752 transcription factor TF Family: AUX/IAA Auxin-induced protein 22D, putative [Ricinus communis]
8 Hb_000732_240 0.2178543289 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
9 Hb_007951_090 0.2224075606 - - hypothetical protein POPTR_0003s06080g [Populus trichocarpa]
10 Hb_000936_040 0.2241427291 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
11 Hb_007075_020 0.2265137285 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
12 Hb_002035_020 0.2280267409 transcription factor TF Family: TRAF hypothetical protein B456_011G050200 [Gossypium raimondii]
13 Hb_032050_070 0.2311305168 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
14 Hb_007545_200 0.2341686612 - - Pectinesterase-3 precursor, putative [Ricinus communis]
15 Hb_004611_060 0.2355838044 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_025595_010 0.2392269971 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
17 Hb_049915_010 0.2409586181 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
18 Hb_158349_010 0.2415029508 - - plastid CUL1 [Hevea brasiliensis]
19 Hb_119600_020 0.2417334063 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_009476_150 0.2440448353 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]

Gene co-expression network

sample Hb_048944_020 Hb_048944_020 Hb_101370_010 Hb_101370_010 Hb_048944_020--Hb_101370_010 Hb_035761_010 Hb_035761_010 Hb_048944_020--Hb_035761_010 Hb_000438_150 Hb_000438_150 Hb_048944_020--Hb_000438_150 Hb_005056_100 Hb_005056_100 Hb_048944_020--Hb_005056_100 Hb_000099_190 Hb_000099_190 Hb_048944_020--Hb_000099_190 Hb_000189_070 Hb_000189_070 Hb_048944_020--Hb_000189_070 Hb_101370_010--Hb_005056_100 Hb_000732_240 Hb_000732_240 Hb_101370_010--Hb_000732_240 Hb_007951_090 Hb_007951_090 Hb_101370_010--Hb_007951_090 Hb_000172_230 Hb_000172_230 Hb_101370_010--Hb_000172_230 Hb_158349_010 Hb_158349_010 Hb_101370_010--Hb_158349_010 Hb_035761_010--Hb_000099_190 Hb_035761_010--Hb_000732_240 Hb_187021_010 Hb_187021_010 Hb_035761_010--Hb_187021_010 Hb_035761_010--Hb_101370_010 Hb_154538_010 Hb_154538_010 Hb_035761_010--Hb_154538_010 Hb_009476_150 Hb_009476_150 Hb_000438_150--Hb_009476_150 Hb_000438_150--Hb_000099_190 Hb_000438_150--Hb_000732_240 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_001405_060 Hb_001405_060 Hb_005056_100--Hb_001405_060 Hb_002233_080 Hb_002233_080 Hb_005056_100--Hb_002233_080 Hb_000567_220 Hb_000567_220 Hb_005056_100--Hb_000567_220 Hb_012395_260 Hb_012395_260 Hb_005056_100--Hb_012395_260 Hb_004297_080 Hb_004297_080 Hb_005056_100--Hb_004297_080 Hb_000099_190--Hb_000732_240 Hb_049915_010 Hb_049915_010 Hb_000099_190--Hb_049915_010 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070 Hb_042491_010 Hb_042491_010 Hb_000189_070--Hb_042491_010 Hb_003647_040 Hb_003647_040 Hb_000189_070--Hb_003647_040 Hb_033053_020 Hb_033053_020 Hb_000189_070--Hb_033053_020 Hb_012727_010 Hb_012727_010 Hb_000189_070--Hb_012727_010 Hb_036176_010 Hb_036176_010 Hb_000189_070--Hb_036176_010 Hb_032050_070 Hb_032050_070 Hb_000189_070--Hb_032050_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538536 0.1555 0.0487464 0.231771 0.012717 0.0125779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0362709 0

CAGE analysis