Hb_000438_150

Information

Type transcription factor
Description TF Family: HMG
Location Contig438: 125968-127338
Sequence    

Annotation

kegg
ID pop:POPTR_0019s07560g
description POPTRDRAFT_780191; hypothetical protein
nr
ID XP_012091182.1
description PREDICTED: high mobility group B protein 7 [Jatropha curcas]
swissprot
ID Q8LDF9
description High mobility group B protein 7 OS=Arabidopsis thaliana GN=HMGB7 PE=1 SV=1
trembl
ID B9IPI8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s07560g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42572: 126020-127117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000438_150 0.0 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
2 Hb_009476_150 0.1693823141 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
3 Hb_000099_190 0.1757987766 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
4 Hb_000732_240 0.1996653797 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
5 Hb_048944_020 0.203257701 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
6 Hb_002196_010 0.2032967193 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
7 Hb_007157_060 0.2052934056 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_035761_010 0.2073016674 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_006286_010 0.20920188 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
10 Hb_005464_030 0.2148300063 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000936_040 0.2163439092 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
12 Hb_065841_010 0.2166071245 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
13 Hb_025595_010 0.2243099067 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
14 Hb_161994_040 0.2253555752 - - -
15 Hb_005504_020 0.2267585352 - - -
16 Hb_001255_010 0.2281356203 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
17 Hb_145317_010 0.2297486099 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
18 Hb_017434_070 0.2337962657 - - transcription factor, putative [Ricinus communis]
19 Hb_001357_280 0.2351600725 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
20 Hb_009102_020 0.2382333972 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000438_150 Hb_000438_150 Hb_009476_150 Hb_009476_150 Hb_000438_150--Hb_009476_150 Hb_000099_190 Hb_000099_190 Hb_000438_150--Hb_000099_190 Hb_000732_240 Hb_000732_240 Hb_000438_150--Hb_000732_240 Hb_048944_020 Hb_048944_020 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_007157_060 Hb_007157_060 Hb_000438_150--Hb_007157_060 Hb_012258_020 Hb_012258_020 Hb_009476_150--Hb_012258_020 Hb_002233_070 Hb_002233_070 Hb_009476_150--Hb_002233_070 Hb_001357_280 Hb_001357_280 Hb_009476_150--Hb_001357_280 Hb_006286_010 Hb_006286_010 Hb_009476_150--Hb_006286_010 Hb_009476_150--Hb_000732_240 Hb_000099_190--Hb_000732_240 Hb_035761_010 Hb_035761_010 Hb_000099_190--Hb_035761_010 Hb_049915_010 Hb_049915_010 Hb_000099_190--Hb_049915_010 Hb_000914_050 Hb_000914_050 Hb_000099_190--Hb_000914_050 Hb_001103_070 Hb_001103_070 Hb_000099_190--Hb_001103_070 Hb_101370_010 Hb_101370_010 Hb_000732_240--Hb_101370_010 Hb_000732_240--Hb_035761_010 Hb_000732_240--Hb_049915_010 Hb_017159_010 Hb_017159_010 Hb_000732_240--Hb_017159_010 Hb_000732_240--Hb_001357_280 Hb_048944_020--Hb_101370_010 Hb_048944_020--Hb_035761_010 Hb_005056_100 Hb_005056_100 Hb_048944_020--Hb_005056_100 Hb_048944_020--Hb_000099_190 Hb_000189_070 Hb_000189_070 Hb_048944_020--Hb_000189_070 Hb_001622_010 Hb_001622_010 Hb_002196_010--Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_002196_010--Hb_005464_030 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_001865_040 Hb_001865_040 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200 Hb_065841_010 Hb_065841_010 Hb_007157_060--Hb_065841_010 Hb_006483_030 Hb_006483_030 Hb_007157_060--Hb_006483_030 Hb_007749_010 Hb_007749_010 Hb_007157_060--Hb_007749_010 Hb_145317_010 Hb_145317_010 Hb_007157_060--Hb_145317_010 Hb_000181_290 Hb_000181_290 Hb_007157_060--Hb_000181_290 Hb_000818_100 Hb_000818_100 Hb_007157_060--Hb_000818_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.80478 3.47227 1.61424 5.41834 0.650573 0.951524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114611 0.180117 0 0.519896 0.17179

CAGE analysis