Hb_001622_010

Information

Type -
Description -
Location Contig1622: 3601-24025
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9C821
description Proline-rich receptor-like protein kinase PERK15 OS=Arabidopsis thaliana GN=PERK15 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14657: 4580-4725 , PASA_asmbl_14658: 7572-7713
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001622_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_005464_030 0.1250993872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002196_010 0.1599445951 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
4 Hb_010531_050 0.167123862 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
5 Hb_001865_040 0.1912316535 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_178127_010 0.1932465194 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
7 Hb_128695_030 0.196971695 - - heat shock protein, putative [Ricinus communis]
8 Hb_000175_350 0.1971227206 - - phopholipase d alpha, putative [Ricinus communis]
9 Hb_000836_370 0.1976648121 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
10 Hb_005000_300 0.2003442466 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
11 Hb_002928_160 0.2030968177 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
12 Hb_003914_030 0.2034035826 - - -
13 Hb_001114_020 0.2047159246 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
14 Hb_005054_310 0.206153189 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
15 Hb_001231_080 0.2092470945 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
16 Hb_002863_100 0.2103931387 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
17 Hb_000056_300 0.2111771401 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
18 Hb_000152_640 0.2114991292 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
19 Hb_000599_130 0.2117022559 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
20 Hb_000175_500 0.2127002043 - - PREDICTED: uncharacterized protein At1g15400 [Populus euphratica]

Gene co-expression network

sample Hb_001622_010 Hb_001622_010 Hb_005464_030 Hb_005464_030 Hb_001622_010--Hb_005464_030 Hb_002196_010 Hb_002196_010 Hb_001622_010--Hb_002196_010 Hb_010531_050 Hb_010531_050 Hb_001622_010--Hb_010531_050 Hb_001865_040 Hb_001865_040 Hb_001622_010--Hb_001865_040 Hb_178127_010 Hb_178127_010 Hb_001622_010--Hb_178127_010 Hb_128695_030 Hb_128695_030 Hb_001622_010--Hb_128695_030 Hb_005464_030--Hb_002196_010 Hb_005464_030--Hb_001865_040 Hb_002027_380 Hb_002027_380 Hb_005464_030--Hb_002027_380 Hb_005464_030--Hb_010531_050 Hb_002326_070 Hb_002326_070 Hb_005464_030--Hb_002326_070 Hb_006420_020 Hb_006420_020 Hb_002196_010--Hb_006420_020 Hb_080147_080 Hb_080147_080 Hb_002196_010--Hb_080147_080 Hb_002196_010--Hb_001865_040 Hb_009393_200 Hb_009393_200 Hb_002196_010--Hb_009393_200 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_031527_070 Hb_031527_070 Hb_010531_050--Hb_031527_070 Hb_114984_010 Hb_114984_010 Hb_010531_050--Hb_114984_010 Hb_000984_250 Hb_000984_250 Hb_010531_050--Hb_000984_250 Hb_005333_030 Hb_005333_030 Hb_001865_040--Hb_005333_030 Hb_000336_270 Hb_000336_270 Hb_001865_040--Hb_000336_270 Hb_002742_080 Hb_002742_080 Hb_001865_040--Hb_002742_080 Hb_001882_040 Hb_001882_040 Hb_001865_040--Hb_001882_040 Hb_002783_010 Hb_002783_010 Hb_001865_040--Hb_002783_010 Hb_002081_120 Hb_002081_120 Hb_001865_040--Hb_002081_120 Hb_001565_020 Hb_001565_020 Hb_178127_010--Hb_001565_020 Hb_178127_010--Hb_128695_030 Hb_005000_300 Hb_005000_300 Hb_178127_010--Hb_005000_300 Hb_000120_420 Hb_000120_420 Hb_178127_010--Hb_000120_420 Hb_018301_010 Hb_018301_010 Hb_178127_010--Hb_018301_010 Hb_011909_060 Hb_011909_060 Hb_178127_010--Hb_011909_060 Hb_000056_300 Hb_000056_300 Hb_128695_030--Hb_000056_300 Hb_128695_030--Hb_001565_020 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_005054_310 Hb_005054_310 Hb_128695_030--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_128695_030--Hb_000836_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.6447 25.0084 12.2404 12.4143 7.83896 9.97907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.328146 0.387337 2.31162 5.27539 1.47682

CAGE analysis