Hb_000984_250

Information

Type -
Description -
Location Contig984: 271066-273398
Sequence    

Annotation

kegg
ID tcc:TCM_034618
description Formin-like protein 18
nr
ID XP_012068127.1
description PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15963 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64578: 271083-273525
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000984_250 0.0 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
2 Hb_001952_130 0.1623037325 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
3 Hb_006915_020 0.178355607 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
4 Hb_000789_130 0.1831549979 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
5 Hb_010531_050 0.1862126301 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
6 Hb_000733_050 0.1904455331 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
7 Hb_013016_020 0.1958534289 - - Disease resistance protein RPS2, putative [Ricinus communis]
8 Hb_186857_010 0.2035607267 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_031527_070 0.2040316232 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
10 Hb_009485_020 0.2070427359 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
11 Hb_009265_050 0.2095770939 - - PREDICTED: glucosidase 2 subunit beta [Jatropha curcas]
12 Hb_004611_030 0.2106635198 - - structural maintenance of chromosomes 5 smc5, putative [Ricinus communis]
13 Hb_002092_110 0.2108346184 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
14 Hb_006508_030 0.2114405893 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
15 Hb_000453_140 0.2127795857 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
16 Hb_003894_040 0.2127917933 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_000317_060 0.2150690727 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
18 Hb_000010_270 0.2180438252 - - PREDICTED: vignain [Jatropha curcas]
19 Hb_114984_010 0.2190318014 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000516_040 0.2196056106 - - PREDICTED: uncharacterized protein LOC105649502 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000984_250 Hb_000984_250 Hb_001952_130 Hb_001952_130 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_003388_050 Hb_003388_050 Hb_001952_130--Hb_003388_050 Hb_001675_120 Hb_001675_120 Hb_001952_130--Hb_001675_120 Hb_004525_070 Hb_004525_070 Hb_001952_130--Hb_004525_070 Hb_001952_130--Hb_006915_020 Hb_031527_070 Hb_031527_070 Hb_001952_130--Hb_031527_070 Hb_027380_030 Hb_027380_030 Hb_006915_020--Hb_027380_030 Hb_002092_100 Hb_002092_100 Hb_006915_020--Hb_002092_100 Hb_000021_020 Hb_000021_020 Hb_006915_020--Hb_000021_020 Hb_000165_140 Hb_000165_140 Hb_006915_020--Hb_000165_140 Hb_003894_040 Hb_003894_040 Hb_006915_020--Hb_003894_040 Hb_000453_140 Hb_000453_140 Hb_006915_020--Hb_000453_140 Hb_000816_010 Hb_000816_010 Hb_000789_130--Hb_000816_010 Hb_010521_020 Hb_010521_020 Hb_000789_130--Hb_010521_020 Hb_005568_100 Hb_005568_100 Hb_000789_130--Hb_005568_100 Hb_000505_110 Hb_000505_110 Hb_000789_130--Hb_000505_110 Hb_000789_130--Hb_000453_140 Hb_000997_410 Hb_000997_410 Hb_010531_050--Hb_000997_410 Hb_001622_010 Hb_001622_010 Hb_010531_050--Hb_001622_010 Hb_010531_050--Hb_031527_070 Hb_114984_010 Hb_114984_010 Hb_010531_050--Hb_114984_010 Hb_005464_030 Hb_005464_030 Hb_010531_050--Hb_005464_030 Hb_029866_100 Hb_029866_100 Hb_000733_050--Hb_029866_100 Hb_009485_020 Hb_009485_020 Hb_000733_050--Hb_009485_020 Hb_002804_020 Hb_002804_020 Hb_000733_050--Hb_002804_020 Hb_002837_060 Hb_002837_060 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_003858_040 Hb_003858_040 Hb_000733_050--Hb_003858_040 Hb_000139_230 Hb_000139_230 Hb_013016_020--Hb_000139_230 Hb_000538_260 Hb_000538_260 Hb_013016_020--Hb_000538_260 Hb_000317_060 Hb_000317_060 Hb_013016_020--Hb_000317_060 Hb_013016_020--Hb_006915_020 Hb_000156_160 Hb_000156_160 Hb_013016_020--Hb_000156_160 Hb_000859_050 Hb_000859_050 Hb_013016_020--Hb_000859_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7066 8.37675 15.1899 12.2856 18.8299 7.01709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39358 0.399486 0.46815 13.3131 5.01586

CAGE analysis