Hb_001675_120

Information

Type -
Description -
Location Contig1675: 71677-73680
Sequence    

Annotation

kegg
ID rcu:RCOM_1493920
description glycerate dehydrogenase, putative (EC:1.1.1.26)
nr
ID XP_012073372.1
description PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
swissprot
ID Q65CJ7
description Hydroxyphenylpyruvate reductase OS=Plectranthus scutellarioides GN=HPPR PE=1 SV=2
trembl
ID A0A067KYC9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06301 PE=3 SV=1
Gene Ontology
ID GO:0016616
description hydroxyphenylpyruvate reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001675_120 0.0 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
2 Hb_001952_130 0.1837325204 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
3 Hb_000003_150 0.2213976722 - - PREDICTED: probable protein arginine N-methyltransferase 6 [Jatropha curcas]
4 Hb_000197_050 0.2286679527 - - AGPase large subunit protein [Hevea brasiliensis]
5 Hb_000984_250 0.2369072375 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
6 Hb_003388_050 0.2386268793 - - -
7 Hb_002498_280 0.2414219281 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
8 Hb_004525_070 0.252454985 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_007645_120 0.2615876635 - - hypothetical protein POPTR_0006s05370g [Populus trichocarpa]
10 Hb_002217_420 0.2617731459 - - hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
11 Hb_003780_090 0.2691058117 - - PREDICTED: transcription factor bHLH128 [Jatropha curcas]
12 Hb_000098_030 0.2696432269 - - MLO-like protein 4 [Gossypium arboreum]
13 Hb_031527_070 0.2703219844 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
14 Hb_003581_080 0.2719300464 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
15 Hb_007594_100 0.27203135 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
16 Hb_000359_120 0.2721693574 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002157_050 0.2723945877 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
18 Hb_001662_040 0.2764920807 - - DNA helicase, putative [Ricinus communis]
19 Hb_163591_010 0.2823492199 - - PREDICTED: amidase 1-like isoform X2 [Populus euphratica]
20 Hb_002890_100 0.2829743638 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001675_120 Hb_001675_120 Hb_001952_130 Hb_001952_130 Hb_001675_120--Hb_001952_130 Hb_000003_150 Hb_000003_150 Hb_001675_120--Hb_000003_150 Hb_000197_050 Hb_000197_050 Hb_001675_120--Hb_000197_050 Hb_000984_250 Hb_000984_250 Hb_001675_120--Hb_000984_250 Hb_003388_050 Hb_003388_050 Hb_001675_120--Hb_003388_050 Hb_002498_280 Hb_002498_280 Hb_001675_120--Hb_002498_280 Hb_001952_130--Hb_000984_250 Hb_001952_130--Hb_003388_050 Hb_004525_070 Hb_004525_070 Hb_001952_130--Hb_004525_070 Hb_006915_020 Hb_006915_020 Hb_001952_130--Hb_006915_020 Hb_031527_070 Hb_031527_070 Hb_001952_130--Hb_031527_070 Hb_000169_190 Hb_000169_190 Hb_000003_150--Hb_000169_190 Hb_012184_050 Hb_012184_050 Hb_000003_150--Hb_012184_050 Hb_007083_010 Hb_007083_010 Hb_000003_150--Hb_007083_010 Hb_000152_670 Hb_000152_670 Hb_000003_150--Hb_000152_670 Hb_009693_030 Hb_009693_030 Hb_000003_150--Hb_009693_030 Hb_114984_010 Hb_114984_010 Hb_000003_150--Hb_114984_010 Hb_000197_050--Hb_004525_070 Hb_001662_040 Hb_001662_040 Hb_000197_050--Hb_001662_040 Hb_007982_050 Hb_007982_050 Hb_000197_050--Hb_007982_050 Hb_000134_250 Hb_000134_250 Hb_000197_050--Hb_000134_250 Hb_003780_090 Hb_003780_090 Hb_000197_050--Hb_003780_090 Hb_001373_160 Hb_001373_160 Hb_000197_050--Hb_001373_160 Hb_000984_250--Hb_006915_020 Hb_000789_130 Hb_000789_130 Hb_000984_250--Hb_000789_130 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_018790_070 Hb_018790_070 Hb_003388_050--Hb_018790_070 Hb_050847_020 Hb_050847_020 Hb_003388_050--Hb_050847_020 Hb_001102_080 Hb_001102_080 Hb_003388_050--Hb_001102_080 Hb_000270_460 Hb_000270_460 Hb_003388_050--Hb_000270_460 Hb_000011_360 Hb_000011_360 Hb_003388_050--Hb_000011_360 Hb_002045_150 Hb_002045_150 Hb_003388_050--Hb_002045_150 Hb_002217_420 Hb_002217_420 Hb_002498_280--Hb_002217_420 Hb_011519_030 Hb_011519_030 Hb_002498_280--Hb_011519_030 Hb_003058_110 Hb_003058_110 Hb_002498_280--Hb_003058_110 Hb_000115_310 Hb_000115_310 Hb_002498_280--Hb_000115_310 Hb_004355_030 Hb_004355_030 Hb_002498_280--Hb_004355_030 Hb_094022_010 Hb_094022_010 Hb_002498_280--Hb_094022_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.367491 0.112746 0.262254 0.106557 0.267375 0.101922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0701629 0.0551667 0 0.402345 0

CAGE analysis