Hb_011519_030

Information

Type -
Description -
Location Contig11519: 33277-34074
Sequence    

Annotation

kegg
ID rcu:RCOM_0569680
description hypothetical protein
nr
ID XP_012086268.1
description PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
swissprot
ID Q6DR24
description Uncharacterized protein At3g17950 OS=Arabidopsis thaliana GN=Y-3 PE=1 SV=1
trembl
ID A0A067JQ15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22707 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011519_030 0.0 - - PREDICTED: uncharacterized protein At3g17950 [Jatropha curcas]
2 Hb_000207_120 0.1514032558 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
3 Hb_002498_280 0.1731040804 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
4 Hb_000009_480 0.1763435654 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
5 Hb_003858_040 0.1800920583 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
6 Hb_176152_010 0.180558685 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
7 Hb_000376_090 0.1819661275 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
8 Hb_005656_210 0.1823101927 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
9 Hb_002946_160 0.18242517 - - PREDICTED: uricase-2 isozyme 2 [Jatropha curcas]
10 Hb_001501_060 0.1832058693 - - conserved hypothetical protein [Ricinus communis]
11 Hb_162378_010 0.1863977856 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
12 Hb_000071_120 0.1878437562 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
13 Hb_000956_130 0.1910067815 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
14 Hb_028358_010 0.1912310651 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
15 Hb_130323_010 0.1917382115 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
16 Hb_000683_070 0.1936080303 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
17 Hb_003893_030 0.1939390618 - - Protein yrdA, putative [Ricinus communis]
18 Hb_000347_280 0.1946550853 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
19 Hb_002893_020 0.1947566344 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
20 Hb_033594_030 0.1948339355 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_011519_030 Hb_011519_030 Hb_000207_120 Hb_000207_120 Hb_011519_030--Hb_000207_120 Hb_002498_280 Hb_002498_280 Hb_011519_030--Hb_002498_280 Hb_000009_480 Hb_000009_480 Hb_011519_030--Hb_000009_480 Hb_003858_040 Hb_003858_040 Hb_011519_030--Hb_003858_040 Hb_176152_010 Hb_176152_010 Hb_011519_030--Hb_176152_010 Hb_000376_090 Hb_000376_090 Hb_011519_030--Hb_000376_090 Hb_030385_010 Hb_030385_010 Hb_000207_120--Hb_030385_010 Hb_003693_070 Hb_003693_070 Hb_000207_120--Hb_003693_070 Hb_002946_160 Hb_002946_160 Hb_000207_120--Hb_002946_160 Hb_033594_030 Hb_033594_030 Hb_000207_120--Hb_033594_030 Hb_106724_020 Hb_106724_020 Hb_000207_120--Hb_106724_020 Hb_000808_280 Hb_000808_280 Hb_000207_120--Hb_000808_280 Hb_002217_420 Hb_002217_420 Hb_002498_280--Hb_002217_420 Hb_003058_110 Hb_003058_110 Hb_002498_280--Hb_003058_110 Hb_000115_310 Hb_000115_310 Hb_002498_280--Hb_000115_310 Hb_004355_030 Hb_004355_030 Hb_002498_280--Hb_004355_030 Hb_094022_010 Hb_094022_010 Hb_002498_280--Hb_094022_010 Hb_000868_060 Hb_000868_060 Hb_000009_480--Hb_000868_060 Hb_000270_630 Hb_000270_630 Hb_000009_480--Hb_000270_630 Hb_000009_480--Hb_003858_040 Hb_080313_010 Hb_080313_010 Hb_000009_480--Hb_080313_010 Hb_003747_010 Hb_003747_010 Hb_000009_480--Hb_003747_010 Hb_001140_350 Hb_001140_350 Hb_000009_480--Hb_001140_350 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_001396_280 Hb_001396_280 Hb_003858_040--Hb_001396_280 Hb_176152_010--Hb_000376_090 Hb_000347_280 Hb_000347_280 Hb_176152_010--Hb_000347_280 Hb_000335_010 Hb_000335_010 Hb_176152_010--Hb_000335_010 Hb_000329_090 Hb_000329_090 Hb_176152_010--Hb_000329_090 Hb_004586_180 Hb_004586_180 Hb_176152_010--Hb_004586_180 Hb_001863_110 Hb_001863_110 Hb_176152_010--Hb_001863_110 Hb_001501_060 Hb_001501_060 Hb_000376_090--Hb_001501_060 Hb_001976_090 Hb_001976_090 Hb_000376_090--Hb_001976_090 Hb_000209_070 Hb_000209_070 Hb_000376_090--Hb_000209_070 Hb_000376_090--Hb_000329_090 Hb_000025_650 Hb_000025_650 Hb_000376_090--Hb_000025_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8783 2.57272 3.53059 8.77401 9.40579 3.30536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.69317 4.24725 1.89422 5.53633 2.0912

CAGE analysis