Hb_176152_010

Information

Type -
Description -
Location Contig176152: 702-1697
Sequence    

Annotation

kegg
ID rcu:RCOM_0812380
description Myosin heavy chain, fast skeletal muscle, embryonic, putative
nr
ID XP_002518728.1
description Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
swissprot
ID Q9SLN1
description Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2
trembl
ID B9RYE4
description Myosin heavy chain, fast skeletal muscle, embryonic, putative OS=Ricinus communis GN=RCOM_0812380 PE=4 SV=1
Gene Ontology
ID GO:0044464
description filament-like plant protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176152_010 0.0 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
2 Hb_000376_090 0.0762206157 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
3 Hb_000347_280 0.0929989464 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
4 Hb_000335_010 0.0930941247 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000329_090 0.0958038535 - - arginase, putative [Ricinus communis]
6 Hb_004586_180 0.0964494825 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
7 Hb_001863_110 0.1054224308 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
8 Hb_015763_030 0.1071861595 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003581_120 0.1103663805 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
10 Hb_001976_090 0.1108674978 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
11 Hb_000789_080 0.1116097044 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
12 Hb_164010_060 0.1127619381 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
13 Hb_003090_080 0.114581546 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
14 Hb_002675_060 0.1147517762 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
15 Hb_031754_010 0.1160414666 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
16 Hb_021409_170 0.1165448133 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_000457_060 0.1172433236 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
18 Hb_080313_010 0.1173896042 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
19 Hb_007590_080 0.1178059158 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
20 Hb_027028_020 0.1186313749 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]

Gene co-expression network

sample Hb_176152_010 Hb_176152_010 Hb_000376_090 Hb_000376_090 Hb_176152_010--Hb_000376_090 Hb_000347_280 Hb_000347_280 Hb_176152_010--Hb_000347_280 Hb_000335_010 Hb_000335_010 Hb_176152_010--Hb_000335_010 Hb_000329_090 Hb_000329_090 Hb_176152_010--Hb_000329_090 Hb_004586_180 Hb_004586_180 Hb_176152_010--Hb_004586_180 Hb_001863_110 Hb_001863_110 Hb_176152_010--Hb_001863_110 Hb_001501_060 Hb_001501_060 Hb_000376_090--Hb_001501_060 Hb_001976_090 Hb_001976_090 Hb_000376_090--Hb_001976_090 Hb_000209_070 Hb_000209_070 Hb_000376_090--Hb_000209_070 Hb_000376_090--Hb_000329_090 Hb_000025_650 Hb_000025_650 Hb_000376_090--Hb_000025_650 Hb_000789_080 Hb_000789_080 Hb_000347_280--Hb_000789_080 Hb_007632_020 Hb_007632_020 Hb_000347_280--Hb_007632_020 Hb_007590_080 Hb_007590_080 Hb_000347_280--Hb_007590_080 Hb_026099_010 Hb_026099_010 Hb_000347_280--Hb_026099_010 Hb_000347_280--Hb_004586_180 Hb_164010_060 Hb_164010_060 Hb_000347_280--Hb_164010_060 Hb_031754_010 Hb_031754_010 Hb_000335_010--Hb_031754_010 Hb_000457_060 Hb_000457_060 Hb_000335_010--Hb_000457_060 Hb_000335_010--Hb_000789_080 Hb_001437_100 Hb_001437_100 Hb_000335_010--Hb_001437_100 Hb_002043_170 Hb_002043_170 Hb_000335_010--Hb_002043_170 Hb_002883_010 Hb_002883_010 Hb_000335_010--Hb_002883_010 Hb_000743_040 Hb_000743_040 Hb_000329_090--Hb_000743_040 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000567_050 Hb_000567_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_010381_060 Hb_010381_060 Hb_000329_090--Hb_010381_060 Hb_004586_180--Hb_164010_060 Hb_004108_140 Hb_004108_140 Hb_004586_180--Hb_004108_140 Hb_003747_010 Hb_003747_010 Hb_004586_180--Hb_003747_010 Hb_004586_180--Hb_026099_010 Hb_106371_010 Hb_106371_010 Hb_004586_180--Hb_106371_010 Hb_185679_010 Hb_185679_010 Hb_004586_180--Hb_185679_010 Hb_000034_050 Hb_000034_050 Hb_001863_110--Hb_000034_050 Hb_001863_110--Hb_000335_010 Hb_003581_120 Hb_003581_120 Hb_001863_110--Hb_003581_120 Hb_010222_030 Hb_010222_030 Hb_001863_110--Hb_010222_030 Hb_002400_180 Hb_002400_180 Hb_001863_110--Hb_002400_180 Hb_002174_060 Hb_002174_060 Hb_001863_110--Hb_002174_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.7245 8.00387 3.46746 11.8081 23.6593 19.2607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.515 6.68935 5.38076 11.1803 6.88138

CAGE analysis