Hb_000376_090

Information

Type -
Description -
Location Contig376: 214101-221247
Sequence    

Annotation

kegg
ID rcu:RCOM_0812380
description Myosin heavy chain, fast skeletal muscle, embryonic, putative
nr
ID XP_002518728.1
description Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
swissprot
ID Q9SLN1
description Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2
trembl
ID B9RYE4
description Myosin heavy chain, fast skeletal muscle, embryonic, putative OS=Ricinus communis GN=RCOM_0812380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38357: 214228-217532 , PASA_asmbl_38358: 217905-218542 , PASA_asmbl_38360: 219303-221442
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000376_090 0.0 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
2 Hb_176152_010 0.0762206157 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
3 Hb_001501_060 0.1021873 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001976_090 0.1107901055 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
5 Hb_000209_070 0.1111134695 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
6 Hb_000329_090 0.1114847895 - - arginase, putative [Ricinus communis]
7 Hb_000025_650 0.1135106255 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
8 Hb_000417_160 0.1167649805 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
9 Hb_015763_030 0.1180962761 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000640_020 0.1193771525 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
11 Hb_017895_020 0.1196464368 - - Vacuolar protein sorting protein, putative [Ricinus communis]
12 Hb_004974_010 0.1203939735 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Prunus mume]
13 Hb_002044_050 0.120539181 - - -
14 Hb_000035_040 0.121464279 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
15 Hb_002675_060 0.1214775634 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
16 Hb_001235_200 0.1226692977 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000347_280 0.1229160341 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
18 Hb_000335_010 0.122955988 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_022250_110 0.123121552 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]
20 Hb_000331_160 0.123944069 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]

Gene co-expression network

sample Hb_000376_090 Hb_000376_090 Hb_176152_010 Hb_176152_010 Hb_000376_090--Hb_176152_010 Hb_001501_060 Hb_001501_060 Hb_000376_090--Hb_001501_060 Hb_001976_090 Hb_001976_090 Hb_000376_090--Hb_001976_090 Hb_000209_070 Hb_000209_070 Hb_000376_090--Hb_000209_070 Hb_000329_090 Hb_000329_090 Hb_000376_090--Hb_000329_090 Hb_000025_650 Hb_000025_650 Hb_000376_090--Hb_000025_650 Hb_000347_280 Hb_000347_280 Hb_176152_010--Hb_000347_280 Hb_000335_010 Hb_000335_010 Hb_176152_010--Hb_000335_010 Hb_176152_010--Hb_000329_090 Hb_004586_180 Hb_004586_180 Hb_176152_010--Hb_004586_180 Hb_001863_110 Hb_001863_110 Hb_176152_010--Hb_001863_110 Hb_001050_010 Hb_001050_010 Hb_001501_060--Hb_001050_010 Hb_000480_010 Hb_000480_010 Hb_001501_060--Hb_000480_010 Hb_000868_060 Hb_000868_060 Hb_001501_060--Hb_000868_060 Hb_001102_080 Hb_001102_080 Hb_001501_060--Hb_001102_080 Hb_002888_070 Hb_002888_070 Hb_001501_060--Hb_002888_070 Hb_010180_040 Hb_010180_040 Hb_001976_090--Hb_010180_040 Hb_000331_160 Hb_000331_160 Hb_001976_090--Hb_000331_160 Hb_005494_020 Hb_005494_020 Hb_001976_090--Hb_005494_020 Hb_080313_010 Hb_080313_010 Hb_001976_090--Hb_080313_010 Hb_001976_090--Hb_176152_010 Hb_001473_090 Hb_001473_090 Hb_000209_070--Hb_001473_090 Hb_022250_110 Hb_022250_110 Hb_000209_070--Hb_022250_110 Hb_000160_290 Hb_000160_290 Hb_000209_070--Hb_000160_290 Hb_001675_070 Hb_001675_070 Hb_000209_070--Hb_001675_070 Hb_000029_320 Hb_000029_320 Hb_000209_070--Hb_000029_320 Hb_003464_020 Hb_003464_020 Hb_000209_070--Hb_003464_020 Hb_000743_040 Hb_000743_040 Hb_000329_090--Hb_000743_040 Hb_000714_050 Hb_000714_050 Hb_000329_090--Hb_000714_050 Hb_000567_050 Hb_000567_050 Hb_000329_090--Hb_000567_050 Hb_000320_200 Hb_000320_200 Hb_000329_090--Hb_000320_200 Hb_001235_200 Hb_001235_200 Hb_000329_090--Hb_001235_200 Hb_010381_060 Hb_010381_060 Hb_000329_090--Hb_010381_060 Hb_000935_090 Hb_000935_090 Hb_000025_650--Hb_000935_090 Hb_000347_570 Hb_000347_570 Hb_000025_650--Hb_000347_570 Hb_001178_150 Hb_001178_150 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_004429_160 Hb_004429_160 Hb_000025_650--Hb_004429_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.8555 8.99262 4.67273 10.6129 22.5338 15.4023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.41553 4.04249 3.33154 10.6145 6.77413

CAGE analysis