Hb_001501_060

Information

Type -
Description -
Location Contig1501: 81906-84811
Sequence    

Annotation

kegg
ID rcu:RCOM_1016720
description hypothetical protein
nr
ID XP_002529333.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1016720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12561: 82505-83184 , PASA_asmbl_12562: 82048-84816 , PASA_asmbl_12563: 82250-82470 , PASA_asmbl_12564: 82148-84191 , PASA_asmbl_12565: 83420-84156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001501_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001050_010 0.0857105686 - - Advillin [Gossypium arboreum]
3 Hb_000480_010 0.0923529074 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000868_060 0.0931285679 - - PREDICTED: conserved oligomeric Golgi complex subunit 3 [Jatropha curcas]
5 Hb_001102_080 0.097909143 - - PREDICTED: anaphase-promoting complex subunit 4 [Jatropha curcas]
6 Hb_000376_090 0.1021873 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
7 Hb_002888_070 0.1056264172 - - PREDICTED: tubulin-folding cofactor E isoform X1 [Pyrus x bretschneideri]
8 Hb_002675_060 0.1090909719 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
9 Hb_000009_480 0.1097202375 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
10 Hb_000395_020 0.1118745009 - - PREDICTED: ankyrin repeat and KH domain-containing protein R11A8.7 [Jatropha curcas]
11 Hb_003858_040 0.1120332745 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
12 Hb_011915_010 0.1127292795 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
13 Hb_002249_120 0.1132163688 - - RNA-binding protein, putative [Ricinus communis]
14 Hb_001900_120 0.1155795102 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
15 Hb_000345_530 0.1179048177 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
16 Hb_007044_040 0.1181422895 - - PREDICTED: uncharacterized protein LOC105646814 [Jatropha curcas]
17 Hb_002249_160 0.1185988241 - - -
18 Hb_000797_050 0.1189908485 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
19 Hb_017895_020 0.1190329835 - - Vacuolar protein sorting protein, putative [Ricinus communis]
20 Hb_001198_150 0.1193920288 - - hypothetical protein POPTR_0003s01280g [Populus trichocarpa]

Gene co-expression network

sample Hb_001501_060 Hb_001501_060 Hb_001050_010 Hb_001050_010 Hb_001501_060--Hb_001050_010 Hb_000480_010 Hb_000480_010 Hb_001501_060--Hb_000480_010 Hb_000868_060 Hb_000868_060 Hb_001501_060--Hb_000868_060 Hb_001102_080 Hb_001102_080 Hb_001501_060--Hb_001102_080 Hb_000376_090 Hb_000376_090 Hb_001501_060--Hb_000376_090 Hb_002888_070 Hb_002888_070 Hb_001501_060--Hb_002888_070 Hb_001050_010--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_001050_010--Hb_000002_490 Hb_011915_010 Hb_011915_010 Hb_001050_010--Hb_011915_010 Hb_001900_120 Hb_001900_120 Hb_001050_010--Hb_001900_120 Hb_011609_170 Hb_011609_170 Hb_001050_010--Hb_011609_170 Hb_000395_020 Hb_000395_020 Hb_001050_010--Hb_000395_020 Hb_003126_100 Hb_003126_100 Hb_000480_010--Hb_003126_100 Hb_000480_010--Hb_001102_080 Hb_000480_010--Hb_002888_070 Hb_001341_120 Hb_001341_120 Hb_000480_010--Hb_001341_120 Hb_000480_010--Hb_000868_060 Hb_007044_040 Hb_007044_040 Hb_000480_010--Hb_007044_040 Hb_000868_060--Hb_002888_070 Hb_000868_060--Hb_000395_020 Hb_000868_060--Hb_001102_080 Hb_001085_320 Hb_001085_320 Hb_000868_060--Hb_001085_320 Hb_001040_040 Hb_001040_040 Hb_000868_060--Hb_001040_040 Hb_001102_080--Hb_002888_070 Hb_001102_080--Hb_007044_040 Hb_000270_460 Hb_000270_460 Hb_001102_080--Hb_000270_460 Hb_018790_070 Hb_018790_070 Hb_001102_080--Hb_018790_070 Hb_176152_010 Hb_176152_010 Hb_000376_090--Hb_176152_010 Hb_001976_090 Hb_001976_090 Hb_000376_090--Hb_001976_090 Hb_000209_070 Hb_000209_070 Hb_000376_090--Hb_000209_070 Hb_000329_090 Hb_000329_090 Hb_000376_090--Hb_000329_090 Hb_000025_650 Hb_000025_650 Hb_000376_090--Hb_000025_650 Hb_002888_070--Hb_003126_100 Hb_000914_080 Hb_000914_080 Hb_002888_070--Hb_000914_080 Hb_011930_080 Hb_011930_080 Hb_002888_070--Hb_011930_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.284 27.7246 52.5067 53.3031 114.678 91.1442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.5742 18.4985 23.2231 53.3541 27.8782

CAGE analysis