Hb_002217_420

Information

Type -
Description -
Location Contig2217: 345659-346291
Sequence    

Annotation

kegg
ID eus:EUTSA_v10021493mg
description hypothetical protein
nr
ID XP_006407332.1
description hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
swissprot
ID -
description -
trembl
ID V4LE82
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10021493mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description deddy 3 -5 exonuclease domain-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002217_420 0.0 - - hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
2 Hb_002498_280 0.122341603 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
3 Hb_000115_310 0.1863334161 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
4 Hb_000010_250 0.2032551312 - - PREDICTED: protein tipD [Jatropha curcas]
5 Hb_002890_210 0.2078477614 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
6 Hb_094022_010 0.2175132386 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
7 Hb_039894_010 0.2179660112 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_089497_010 0.2207295311 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
9 Hb_007451_020 0.2227364654 - - PREDICTED: U1 small nuclear ribonucleoprotein C [Jatropha curcas]
10 Hb_001507_100 0.2234569372 - - cytochrome P450, putative [Ricinus communis]
11 Hb_004453_040 0.2256621244 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
12 Hb_003073_200 0.2263208516 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
13 Hb_003159_080 0.2271920947 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
14 Hb_003058_110 0.2297064984 - - PREDICTED: alpha-mannosidase isoform X2 [Populus euphratica]
15 Hb_004355_030 0.2332841246 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
16 Hb_000002_330 0.2362394348 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
17 Hb_001946_260 0.2364048813 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
18 Hb_006816_500 0.2365237701 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
19 Hb_052764_090 0.2368387773 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003106_070 0.2390040296 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]

Gene co-expression network

sample Hb_002217_420 Hb_002217_420 Hb_002498_280 Hb_002498_280 Hb_002217_420--Hb_002498_280 Hb_000115_310 Hb_000115_310 Hb_002217_420--Hb_000115_310 Hb_000010_250 Hb_000010_250 Hb_002217_420--Hb_000010_250 Hb_002890_210 Hb_002890_210 Hb_002217_420--Hb_002890_210 Hb_094022_010 Hb_094022_010 Hb_002217_420--Hb_094022_010 Hb_039894_010 Hb_039894_010 Hb_002217_420--Hb_039894_010 Hb_011519_030 Hb_011519_030 Hb_002498_280--Hb_011519_030 Hb_003058_110 Hb_003058_110 Hb_002498_280--Hb_003058_110 Hb_002498_280--Hb_000115_310 Hb_004355_030 Hb_004355_030 Hb_002498_280--Hb_004355_030 Hb_002498_280--Hb_094022_010 Hb_000115_310--Hb_039894_010 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_001089_020 Hb_001089_020 Hb_000010_250--Hb_001089_020 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_004453_040 Hb_004453_040 Hb_000010_250--Hb_004453_040 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_001902_070 Hb_001902_070 Hb_002890_210--Hb_001902_070 Hb_003120_030 Hb_003120_030 Hb_002890_210--Hb_003120_030 Hb_000002_330 Hb_000002_330 Hb_002890_210--Hb_000002_330 Hb_000500_280 Hb_000500_280 Hb_002890_210--Hb_000500_280 Hb_054301_010 Hb_054301_010 Hb_002890_210--Hb_054301_010 Hb_186982_030 Hb_186982_030 Hb_002890_210--Hb_186982_030 Hb_000699_130 Hb_000699_130 Hb_094022_010--Hb_000699_130 Hb_094022_010--Hb_003752_080 Hb_000529_080 Hb_000529_080 Hb_094022_010--Hb_000529_080 Hb_094022_010--Hb_000002_330 Hb_000342_110 Hb_000342_110 Hb_094022_010--Hb_000342_110 Hb_007803_010 Hb_007803_010 Hb_094022_010--Hb_007803_010 Hb_015763_020 Hb_015763_020 Hb_039894_010--Hb_015763_020 Hb_000445_300 Hb_000445_300 Hb_039894_010--Hb_000445_300 Hb_001009_290 Hb_001009_290 Hb_039894_010--Hb_001009_290 Hb_004136_040 Hb_004136_040 Hb_039894_010--Hb_004136_040 Hb_004920_130 Hb_004920_130 Hb_039894_010--Hb_004920_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42134 1.26981 0.720858 0.72156 2.97739 1.24604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.96007 2.27423 0.387846 4.52921 0.143143

CAGE analysis