Hb_000500_280

Information

Type -
Description -
Location Contig500: 200966-204820
Sequence    

Annotation

kegg
ID rcu:RCOM_0635730
description Brassinosteroid-regulated protein BRU1 precursor, putative (EC:2.4.1.207)
nr
ID XP_002519767.1
description Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
swissprot
ID Q9FI31
description Xyloglucan endotransglucosylase/hydrolase protein 20 OS=Arabidopsis thaliana GN=XTH20 PE=2 SV=1
trembl
ID B9S198
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_0635730 PE=3 SV=1
Gene Ontology
ID GO:0005618
description brassinosteroid-regulated protein bru1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45754: 202523-203198 , PASA_asmbl_45755: 202523-204433 , PASA_asmbl_45756: 204673-204995
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_280 0.0 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
2 Hb_134226_010 0.1123167308 - - 40S ribosomal protein S21e, putative [Ricinus communis]
3 Hb_004204_030 0.1199958991 - - unknown [Populus trichocarpa]
4 Hb_017895_050 0.1240662191 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
5 Hb_000866_300 0.1245437644 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
6 Hb_054301_010 0.1262440504 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
7 Hb_000035_380 0.1265038399 - - -
8 Hb_006501_150 0.1278447359 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002207_100 0.1279730041 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
10 Hb_000847_070 0.128997551 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
11 Hb_004096_170 0.1290823355 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
12 Hb_052135_030 0.1307493586 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
13 Hb_010810_050 0.1311612419 - - hypothetical protein [Cleome spinosa]
14 Hb_000322_050 0.1316478298 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_001804_040 0.1326678189 - - conserved hypothetical protein [Ricinus communis]
16 Hb_150069_020 0.1334601659 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
17 Hb_005527_050 0.1340403882 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
18 Hb_001514_020 0.1348528644 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
19 Hb_143766_090 0.1353836177 - - 60S ribosomal protein L31B [Hevea brasiliensis]
20 Hb_003125_040 0.1367985949 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_280 Hb_000500_280 Hb_134226_010 Hb_134226_010 Hb_000500_280--Hb_134226_010 Hb_004204_030 Hb_004204_030 Hb_000500_280--Hb_004204_030 Hb_017895_050 Hb_017895_050 Hb_000500_280--Hb_017895_050 Hb_000866_300 Hb_000866_300 Hb_000500_280--Hb_000866_300 Hb_054301_010 Hb_054301_010 Hb_000500_280--Hb_054301_010 Hb_000035_380 Hb_000035_380 Hb_000500_280--Hb_000035_380 Hb_000847_070 Hb_000847_070 Hb_134226_010--Hb_000847_070 Hb_133271_020 Hb_133271_020 Hb_134226_010--Hb_133271_020 Hb_118977_020 Hb_118977_020 Hb_134226_010--Hb_118977_020 Hb_003688_100 Hb_003688_100 Hb_134226_010--Hb_003688_100 Hb_001514_020 Hb_001514_020 Hb_134226_010--Hb_001514_020 Hb_001221_230 Hb_001221_230 Hb_134226_010--Hb_001221_230 Hb_001804_040 Hb_001804_040 Hb_004204_030--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_004204_030--Hb_001951_110 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_004204_030--Hb_001514_020 Hb_027892_060 Hb_027892_060 Hb_017895_050--Hb_027892_060 Hb_003453_010 Hb_003453_010 Hb_017895_050--Hb_003453_010 Hb_001437_040 Hb_001437_040 Hb_017895_050--Hb_001437_040 Hb_017895_050--Hb_004204_030 Hb_098709_010 Hb_098709_010 Hb_017895_050--Hb_098709_010 Hb_003911_040 Hb_003911_040 Hb_017895_050--Hb_003911_040 Hb_000866_300--Hb_001951_110 Hb_000866_300--Hb_001804_040 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_001035_030 Hb_001035_030 Hb_054301_010--Hb_001035_030 Hb_054301_010--Hb_004204_030 Hb_054301_010--Hb_000866_300 Hb_054301_010--Hb_001804_040 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_000317_430 Hb_000317_430 Hb_000035_380--Hb_000317_430 Hb_060809_010 Hb_060809_010 Hb_000035_380--Hb_060809_010 Hb_000035_380--Hb_001221_230 Hb_000365_360 Hb_000365_360 Hb_000035_380--Hb_000365_360 Hb_118419_020 Hb_118419_020 Hb_000035_380--Hb_118419_020 Hb_001214_130 Hb_001214_130 Hb_000035_380--Hb_001214_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64209 0.148294 0.387485 0.0742186 1.99407 1.75566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.49326 1.55891 0.978914 0.891943 0.0948083

CAGE analysis