Hb_054301_010

Information

Type -
Description -
Location Contig54301: 1295-3356
Sequence    

Annotation

kegg
ID eus:EUTSA_v10006737mg
description hypothetical protein
nr
ID XP_006416147.1
description hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
swissprot
ID -
description -
trembl
ID V4KA30
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006737mg PE=4 SV=1
Gene Ontology
ID GO:0005829
description scy1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47879: 1409-1540
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054301_010 0.0 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
2 Hb_001035_030 0.0790914451 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
3 Hb_004204_030 0.0893226025 - - unknown [Populus trichocarpa]
4 Hb_000866_300 0.0943425133 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
5 Hb_001804_040 0.1010972199 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001951_110 0.1048918159 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
7 Hb_003001_060 0.1250129351 - - wound-responsive family protein [Populus trichocarpa]
8 Hb_000163_200 0.1250948005 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
9 Hb_000500_280 0.1262440504 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
10 Hb_003878_190 0.1268489914 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
11 Hb_003640_060 0.12869664 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_004607_140 0.1319040496 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
13 Hb_052135_030 0.1337658515 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
14 Hb_006824_020 0.1357441548 - - PREDICTED: thioredoxin domain-containing protein 9 homolog [Jatropha curcas]
15 Hb_001214_030 0.1364752235 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
16 Hb_006501_150 0.1366915822 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007451_030 0.1370261295 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
18 Hb_000318_380 0.1381139281 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
19 Hb_001454_330 0.1395735993 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
20 Hb_001514_020 0.1405760904 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_054301_010 Hb_054301_010 Hb_001035_030 Hb_001035_030 Hb_054301_010--Hb_001035_030 Hb_004204_030 Hb_004204_030 Hb_054301_010--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_054301_010--Hb_000866_300 Hb_001804_040 Hb_001804_040 Hb_054301_010--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_001035_030--Hb_001804_040 Hb_001104_120 Hb_001104_120 Hb_001035_030--Hb_001104_120 Hb_001454_330 Hb_001454_330 Hb_001035_030--Hb_001454_330 Hb_001035_030--Hb_004204_030 Hb_001035_030--Hb_001951_110 Hb_004204_030--Hb_001804_040 Hb_004204_030--Hb_001951_110 Hb_004204_030--Hb_000866_300 Hb_006569_020 Hb_006569_020 Hb_004204_030--Hb_006569_020 Hb_000392_270 Hb_000392_270 Hb_004204_030--Hb_000392_270 Hb_001514_020 Hb_001514_020 Hb_004204_030--Hb_001514_020 Hb_000866_300--Hb_001951_110 Hb_000866_300--Hb_001804_040 Hb_000977_080 Hb_000977_080 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_001804_040--Hb_001951_110 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001366_230 Hb_001366_230 Hb_001804_040--Hb_001366_230 Hb_000417_110 Hb_000417_110 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_003001_060--Hb_000417_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.777 1.26227 1.47193 1.00885 13.8979 7.40323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7224 15.6858 4.93217 4.93001 0.661029

CAGE analysis