Hb_001089_020

Information

Type -
Description -
Location Contig1089: 9964-18735
Sequence    

Annotation

kegg
ID rcu:RCOM_0708800
description red protein, putative
nr
ID XP_012077125.1
description PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
swissprot
ID O48713
description Suppressor of mec-8 and unc-52 protein homolog 2 OS=Arabidopsis thaliana GN=SMU2 PE=1 SV=1
trembl
ID A0A067KG35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07544 PE=4 SV=1
Gene Ontology
ID GO:0005634
description suppressor of mec-8 and unc-52 protein homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02696: 11856-12160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_020 0.0 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
2 Hb_000010_250 0.1225207069 - - PREDICTED: protein tipD [Jatropha curcas]
3 Hb_111198_020 0.1282437415 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
4 Hb_004453_040 0.130386217 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
5 Hb_005271_190 0.1447146342 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_002918_060 0.1452643464 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
7 Hb_011512_090 0.1480756663 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
8 Hb_008103_070 0.1485131371 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
9 Hb_010710_080 0.1499259048 - - -
10 Hb_003849_250 0.1501127781 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
11 Hb_004218_030 0.1520543909 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001278_070 0.1524830173 - - hypothetical protein glysoja_020139 [Glycine soja]
13 Hb_009486_180 0.1526850813 - - unknown [Glycine max]
14 Hb_003952_150 0.1527702515 - - PREDICTED: cactin [Jatropha curcas]
15 Hb_001655_060 0.1551463971 - - PREDICTED: RNA-binding protein 28 [Jatropha curcas]
16 Hb_008406_110 0.1564551954 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
17 Hb_000011_230 0.1570459486 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
18 Hb_002205_040 0.1574453887 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_001152_030 0.1584747707 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
20 Hb_001511_170 0.1589069696 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001089_020 Hb_001089_020 Hb_000010_250 Hb_000010_250 Hb_001089_020--Hb_000010_250 Hb_111198_020 Hb_111198_020 Hb_001089_020--Hb_111198_020 Hb_004453_040 Hb_004453_040 Hb_001089_020--Hb_004453_040 Hb_005271_190 Hb_005271_190 Hb_001089_020--Hb_005271_190 Hb_002918_060 Hb_002918_060 Hb_001089_020--Hb_002918_060 Hb_011512_090 Hb_011512_090 Hb_001089_020--Hb_011512_090 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_000010_250--Hb_004453_040 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_000748_080 Hb_000748_080 Hb_111198_020--Hb_000748_080 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_111198_020--Hb_011512_090 Hb_089497_010 Hb_089497_010 Hb_111198_020--Hb_089497_010 Hb_002400_400 Hb_002400_400 Hb_111198_020--Hb_002400_400 Hb_004724_190 Hb_004724_190 Hb_004453_040--Hb_004724_190 Hb_008055_040 Hb_008055_040 Hb_004453_040--Hb_008055_040 Hb_000261_260 Hb_000261_260 Hb_004453_040--Hb_000261_260 Hb_002205_040 Hb_002205_040 Hb_004453_040--Hb_002205_040 Hb_000538_160 Hb_000538_160 Hb_005271_190--Hb_000538_160 Hb_006198_120 Hb_006198_120 Hb_005271_190--Hb_006198_120 Hb_003529_170 Hb_003529_170 Hb_005271_190--Hb_003529_170 Hb_001655_060 Hb_001655_060 Hb_005271_190--Hb_001655_060 Hb_004954_070 Hb_004954_070 Hb_005271_190--Hb_004954_070 Hb_001062_010 Hb_001062_010 Hb_005271_190--Hb_001062_010 Hb_000059_140 Hb_000059_140 Hb_002918_060--Hb_000059_140 Hb_005892_030 Hb_005892_030 Hb_002918_060--Hb_005892_030 Hb_140049_030 Hb_140049_030 Hb_002918_060--Hb_140049_030 Hb_002422_050 Hb_002422_050 Hb_002918_060--Hb_002422_050 Hb_001427_190 Hb_001427_190 Hb_002918_060--Hb_001427_190 Hb_002045_150 Hb_002045_150 Hb_002918_060--Hb_002045_150 Hb_000976_040 Hb_000976_040 Hb_011512_090--Hb_000976_040 Hb_002110_030 Hb_002110_030 Hb_011512_090--Hb_002110_030 Hb_011512_090--Hb_002400_400 Hb_000200_280 Hb_000200_280 Hb_011512_090--Hb_000200_280 Hb_002005_090 Hb_002005_090 Hb_011512_090--Hb_002005_090 Hb_001621_130 Hb_001621_130 Hb_011512_090--Hb_001621_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60048 6.6654 2.5172 1.49398 13.9688 6.71617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.09645 6.67786 2.03034 11.1116 5.43776

CAGE analysis