Hb_000748_080

Information

Type -
Description -
Location Contig748: 86505-115253
Sequence    

Annotation

kegg
ID rcu:RCOM_1337330
description GTP-dependent nucleic acid-binding protein engD, putative
nr
ID EEC83064.1
description hypothetical protein OsI_28173 [Oryza sativa Indica Group]
swissprot
ID Q7ZWM6
description Obg-like ATPase 1 OS=Xenopus laevis GN=ola1 PE=2 SV=1
trembl
ID B8BBN8
description Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28173 PE=4 SV=1
Gene Ontology
ID GO:0005829
description obg-like atpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_080 0.0 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
2 Hb_006157_020 0.1036264098 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
3 Hb_007017_090 0.1049215113 - - PREDICTED: coiled-coil domain-containing protein 186 [Jatropha curcas]
4 Hb_000086_380 0.1084180902 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
5 Hb_012490_030 0.1118360758 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_001579_320 0.1122619797 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
7 Hb_111198_020 0.112520778 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
8 Hb_012799_130 0.1166778992 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
9 Hb_004954_070 0.1173849947 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
10 Hb_023732_090 0.1175278666 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000023_330 0.1212828184 - - RNA recognition motif-containing family protein [Populus trichocarpa]
12 Hb_000139_290 0.1223435388 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]
13 Hb_021596_030 0.1231580876 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
14 Hb_001289_080 0.1232168797 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_000272_020 0.1237354932 - - oxidoreductase, putative [Ricinus communis]
16 Hb_000317_250 0.1241386618 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
17 Hb_004689_050 0.1247441425 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000638_120 0.1272023926 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
19 Hb_007632_240 0.1272741217 - - transporter, putative [Ricinus communis]
20 Hb_000126_010 0.1275719019 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000748_080 Hb_000748_080 Hb_006157_020 Hb_006157_020 Hb_000748_080--Hb_006157_020 Hb_007017_090 Hb_007017_090 Hb_000748_080--Hb_007017_090 Hb_000086_380 Hb_000086_380 Hb_000748_080--Hb_000086_380 Hb_012490_030 Hb_012490_030 Hb_000748_080--Hb_012490_030 Hb_001579_320 Hb_001579_320 Hb_000748_080--Hb_001579_320 Hb_111198_020 Hb_111198_020 Hb_000748_080--Hb_111198_020 Hb_000271_090 Hb_000271_090 Hb_006157_020--Hb_000271_090 Hb_004429_100 Hb_004429_100 Hb_006157_020--Hb_004429_100 Hb_033834_060 Hb_033834_060 Hb_006157_020--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_006157_020--Hb_004689_050 Hb_031284_040 Hb_031284_040 Hb_006157_020--Hb_031284_040 Hb_012799_130 Hb_012799_130 Hb_006157_020--Hb_012799_130 Hb_001009_250 Hb_001009_250 Hb_007017_090--Hb_001009_250 Hb_000139_290 Hb_000139_290 Hb_007017_090--Hb_000139_290 Hb_002205_210 Hb_002205_210 Hb_007017_090--Hb_002205_210 Hb_003226_140 Hb_003226_140 Hb_007017_090--Hb_003226_140 Hb_033642_090 Hb_033642_090 Hb_007017_090--Hb_033642_090 Hb_001357_250 Hb_001357_250 Hb_007017_090--Hb_001357_250 Hb_004310_130 Hb_004310_130 Hb_000086_380--Hb_004310_130 Hb_005291_030 Hb_005291_030 Hb_000086_380--Hb_005291_030 Hb_027472_150 Hb_027472_150 Hb_000086_380--Hb_027472_150 Hb_021596_030 Hb_021596_030 Hb_000086_380--Hb_021596_030 Hb_002524_010 Hb_002524_010 Hb_000086_380--Hb_002524_010 Hb_000086_380--Hb_001579_320 Hb_002272_180 Hb_002272_180 Hb_012490_030--Hb_002272_180 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_020719_030 Hb_020719_030 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060 Hb_001946_010 Hb_001946_010 Hb_001579_320--Hb_001946_010 Hb_000526_050 Hb_000526_050 Hb_001579_320--Hb_000526_050 Hb_003952_070 Hb_003952_070 Hb_001579_320--Hb_003952_070 Hb_000193_190 Hb_000193_190 Hb_001579_320--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001579_320--Hb_003025_110 Hb_040262_010 Hb_040262_010 Hb_001579_320--Hb_040262_010 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_011512_090 Hb_011512_090 Hb_111198_020--Hb_011512_090 Hb_089497_010 Hb_089497_010 Hb_111198_020--Hb_089497_010 Hb_002400_400 Hb_002400_400 Hb_111198_020--Hb_002400_400 Hb_001089_020 Hb_001089_020 Hb_111198_020--Hb_001089_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.13344 2.64444 2.19378 1.6803 3.82943 6.20825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.35905 4.28965 1.15143 6.09547 2.30784

CAGE analysis