Hb_089497_010

Information

Type -
Description -
Location Contig89497: 229-1307
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06040g
description POPTRDRAFT_814836; hypothetical protein
nr
ID XP_012068603.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
swissprot
ID Q39096
description Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1
trembl
ID A0A067KZS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24492 PE=4 SV=1
Gene Ontology
ID GO:0006950
description protein early responsive to dehydration 15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61746: 321-1351 , PASA_asmbl_61747: 282-1243 , PASA_asmbl_61748: 282-889
cDNA
(Sanger)
(ID:Location)		 013_K18.ab1: 282-889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089497_010 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like isoform X3 [Jatropha curcas]
2 Hb_111198_020 0.1225857305 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
3 Hb_112023_010 0.135975016 - - hypothetical protein EUGRSUZ_C03826 [Eucalyptus grandis]
4 Hb_002400_400 0.1380497156 - - PREDICTED: topless-related protein 1-like isoform X3 [Jatropha curcas]
5 Hb_004136_040 0.1485412496 - - putative protein kinase [Arabidopsis thaliana]
6 Hb_166236_010 0.153054862 - - -
7 Hb_004355_030 0.1581244989 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
8 Hb_011512_090 0.1583678338 - - Hydroxyethylthiazole kinase, putative [Ricinus communis]
9 Hb_000441_150 0.1614752701 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
10 Hb_000748_080 0.1651645889 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
11 Hb_001507_100 0.1658322632 - - cytochrome P450, putative [Ricinus communis]
12 Hb_006111_080 0.1660115502 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
13 Hb_008568_010 0.1675988522 - - Phosphoenolpyruvate carboxykinase [ATP], putative [Ricinus communis]
14 Hb_000087_050 0.1698322916 - - hypothetical protein JCGZ_16227 [Jatropha curcas]
15 Hb_000010_250 0.1722927179 - - PREDICTED: protein tipD [Jatropha curcas]
16 Hb_001472_120 0.1725023148 - - -
17 Hb_010661_050 0.1764258188 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
18 Hb_002217_510 0.1778550219 - - conserved hypothetical protein [Ricinus communis]
19 Hb_094022_010 0.1792215084 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
20 Hb_001089_020 0.181346026 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_089497_010 Hb_089497_010 Hb_111198_020 Hb_111198_020 Hb_089497_010--Hb_111198_020 Hb_112023_010 Hb_112023_010 Hb_089497_010--Hb_112023_010 Hb_002400_400 Hb_002400_400 Hb_089497_010--Hb_002400_400 Hb_004136_040 Hb_004136_040 Hb_089497_010--Hb_004136_040 Hb_166236_010 Hb_166236_010 Hb_089497_010--Hb_166236_010 Hb_004355_030 Hb_004355_030 Hb_089497_010--Hb_004355_030 Hb_000748_080 Hb_000748_080 Hb_111198_020--Hb_000748_080 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_011512_090 Hb_011512_090 Hb_111198_020--Hb_011512_090 Hb_111198_020--Hb_002400_400 Hb_001089_020 Hb_001089_020 Hb_111198_020--Hb_001089_020 Hb_001514_130 Hb_001514_130 Hb_112023_010--Hb_001514_130 Hb_004586_280 Hb_004586_280 Hb_112023_010--Hb_004586_280 Hb_112023_010--Hb_111198_020 Hb_000227_060 Hb_000227_060 Hb_112023_010--Hb_000227_060 Hb_000200_280 Hb_000200_280 Hb_112023_010--Hb_000200_280 Hb_002400_400--Hb_011512_090 Hb_002007_240 Hb_002007_240 Hb_002400_400--Hb_002007_240 Hb_000244_220 Hb_000244_220 Hb_002400_400--Hb_000244_220 Hb_005214_090 Hb_005214_090 Hb_002400_400--Hb_005214_090 Hb_002400_400--Hb_000200_280 Hb_000976_040 Hb_000976_040 Hb_002400_400--Hb_000976_040 Hb_008568_010 Hb_008568_010 Hb_004136_040--Hb_008568_010 Hb_004136_040--Hb_000976_040 Hb_000003_340 Hb_000003_340 Hb_004136_040--Hb_000003_340 Hb_000120_610 Hb_000120_610 Hb_004136_040--Hb_000120_610 Hb_000264_100 Hb_000264_100 Hb_004136_040--Hb_000264_100 Hb_001504_190 Hb_001504_190 Hb_004136_040--Hb_001504_190 Hb_006502_070 Hb_006502_070 Hb_166236_010--Hb_006502_070 Hb_011218_040 Hb_011218_040 Hb_166236_010--Hb_011218_040 Hb_010417_080 Hb_010417_080 Hb_166236_010--Hb_010417_080 Hb_009767_100 Hb_009767_100 Hb_166236_010--Hb_009767_100 Hb_006788_020 Hb_006788_020 Hb_166236_010--Hb_006788_020 Hb_166236_010--Hb_004355_030 Hb_002217_510 Hb_002217_510 Hb_004355_030--Hb_002217_510 Hb_000020_150 Hb_000020_150 Hb_004355_030--Hb_000020_150 Hb_002675_260 Hb_002675_260 Hb_004355_030--Hb_002675_260 Hb_000221_250 Hb_000221_250 Hb_004355_030--Hb_000221_250 Hb_004355_030--Hb_010417_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28251 2.62652 0.995847 0.459044 2.12553 1.66862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.18824 1.50436 0.416372 3.80549 0.554951

CAGE analysis