Hb_166236_010

Information

Type -
Description -
Location Contig166236: 3385-4184
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0E0JMG5
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_166236_010 0.0 - - -
2 Hb_006502_070 0.0781107017 - - separase, putative [Ricinus communis]
3 Hb_011218_040 0.0945942587 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
4 Hb_010417_080 0.0985816332 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
5 Hb_009767_100 0.0986002593 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
6 Hb_006788_020 0.1000274314 - - hypothetical protein JCGZ_21864 [Jatropha curcas]
7 Hb_004355_030 0.1006206077 - - fumarylacetoacetate hydrolase, putative [Ricinus communis]
8 Hb_005288_010 0.1069123074 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_004355_020 0.107928615 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
10 Hb_000441_150 0.1082927069 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_005000_260 0.1147818353 - - recA family protein [Populus trichocarpa]
12 Hb_004577_020 0.1156007312 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
13 Hb_000629_010 0.115972041 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
14 Hb_000221_250 0.1164080536 - - hypothetical protein JCGZ_15814 [Jatropha curcas]
15 Hb_000859_060 0.1192728508 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
16 Hb_001486_160 0.1209443739 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_000856_310 0.1221441048 - - PREDICTED: hypersensitive-induced response protein 1 [Jatropha curcas]
18 Hb_000111_210 0.1226901983 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
19 Hb_000739_100 0.1229916665 - - ku P80 DNA helicase, putative [Ricinus communis]
20 Hb_000252_170 0.1231462445 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_166236_010 Hb_166236_010 Hb_006502_070 Hb_006502_070 Hb_166236_010--Hb_006502_070 Hb_011218_040 Hb_011218_040 Hb_166236_010--Hb_011218_040 Hb_010417_080 Hb_010417_080 Hb_166236_010--Hb_010417_080 Hb_009767_100 Hb_009767_100 Hb_166236_010--Hb_009767_100 Hb_006788_020 Hb_006788_020 Hb_166236_010--Hb_006788_020 Hb_004355_030 Hb_004355_030 Hb_166236_010--Hb_004355_030 Hb_000061_370 Hb_000061_370 Hb_006502_070--Hb_000061_370 Hb_004491_010 Hb_004491_010 Hb_006502_070--Hb_004491_010 Hb_000041_270 Hb_000041_270 Hb_006502_070--Hb_000041_270 Hb_009411_050 Hb_009411_050 Hb_006502_070--Hb_009411_050 Hb_006502_070--Hb_010417_080 Hb_000629_010 Hb_000629_010 Hb_011218_040--Hb_000629_010 Hb_004355_020 Hb_004355_020 Hb_011218_040--Hb_004355_020 Hb_000260_270 Hb_000260_270 Hb_011218_040--Hb_000260_270 Hb_005064_060 Hb_005064_060 Hb_011218_040--Hb_005064_060 Hb_010931_120 Hb_010931_120 Hb_011218_040--Hb_010931_120 Hb_000123_210 Hb_000123_210 Hb_011218_040--Hb_000123_210 Hb_004577_020 Hb_004577_020 Hb_010417_080--Hb_004577_020 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_010417_080--Hb_005064_060 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020 Hb_001005_190 Hb_001005_190 Hb_009767_100--Hb_001005_190 Hb_005288_010 Hb_005288_010 Hb_009767_100--Hb_005288_010 Hb_000859_060 Hb_000859_060 Hb_009767_100--Hb_000859_060 Hb_003055_060 Hb_003055_060 Hb_009767_100--Hb_003055_060 Hb_012055_060 Hb_012055_060 Hb_009767_100--Hb_012055_060 Hb_000189_560 Hb_000189_560 Hb_009767_100--Hb_000189_560 Hb_006788_020--Hb_004355_020 Hb_000556_160 Hb_000556_160 Hb_006788_020--Hb_000556_160 Hb_006788_020--Hb_000629_010 Hb_006788_020--Hb_011218_040 Hb_000739_100 Hb_000739_100 Hb_006788_020--Hb_000739_100 Hb_000571_120 Hb_000571_120 Hb_006788_020--Hb_000571_120 Hb_002217_510 Hb_002217_510 Hb_004355_030--Hb_002217_510 Hb_000020_150 Hb_000020_150 Hb_004355_030--Hb_000020_150 Hb_002675_260 Hb_002675_260 Hb_004355_030--Hb_002675_260 Hb_000221_250 Hb_000221_250 Hb_004355_030--Hb_000221_250 Hb_004355_030--Hb_010417_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0801 10.1428 5.81484 3.43729 6.2088 6.94885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.65403 7.99484 5.97598 11.2538 2.20361

CAGE analysis