Hb_006502_070

Information

Type -
Description -
Location Contig6502: 47034-68758
Sequence    

Annotation

kegg
ID rcu:RCOM_1374500
description separase, putative (EC:3.4.22.49)
nr
ID XP_002529003.1
description separase, putative [Ricinus communis]
swissprot
ID Q5IBC5
description Separase OS=Arabidopsis thaliana GN=ESP1 PE=2 SV=1
trembl
ID B9SSN4
description Separase, putative OS=Ricinus communis GN=RCOM_1374500 PE=4 SV=1
Gene Ontology
ID GO:0005634
description separase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52563: 47742-48089 , PASA_asmbl_52564: 49486-50504 , PASA_asmbl_52565: 50544-51116 , PASA_asmbl_52566: 52250-52737 , PASA_asmbl_52567: 53359-54005 , PASA_asmbl_52568: 59572-59920 , PASA_asmbl_52569: 60986-61816 , PASA_asmbl_52570: 62791-64311 , PASA_asmbl_52571: 68115-68526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_070 0.0 - - separase, putative [Ricinus communis]
2 Hb_166236_010 0.0781107017 - - -
3 Hb_000061_370 0.0856662449 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
4 Hb_004491_010 0.0883740231 - - 60S ribosomal protein L51, putative [Ricinus communis]
5 Hb_000041_270 0.0884449993 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
6 Hb_009411_050 0.0895444157 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
7 Hb_010417_080 0.0898790228 - - PREDICTED: uncharacterized protein LOC105645742 isoform X1 [Jatropha curcas]
8 Hb_002685_170 0.0935018319 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
9 Hb_000629_010 0.0948875103 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
10 Hb_011218_040 0.0969702258 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
11 Hb_012022_030 0.1021127712 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
12 Hb_039946_020 0.1022028471 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001758_100 0.10395158 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
14 Hb_000905_060 0.1060407232 - - protein with unknown function [Ricinus communis]
15 Hb_000457_100 0.1079190539 - - prohibitin, putative [Ricinus communis]
16 Hb_004577_020 0.1079279382 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
17 Hb_001221_100 0.1086179469 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
18 Hb_000421_070 0.1089288337 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_000367_200 0.1093915678 - - hypothetical protein CISIN_1g0362003mg, partial [Citrus sinensis]
20 Hb_003125_200 0.1107705714 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]

Gene co-expression network

sample Hb_006502_070 Hb_006502_070 Hb_166236_010 Hb_166236_010 Hb_006502_070--Hb_166236_010 Hb_000061_370 Hb_000061_370 Hb_006502_070--Hb_000061_370 Hb_004491_010 Hb_004491_010 Hb_006502_070--Hb_004491_010 Hb_000041_270 Hb_000041_270 Hb_006502_070--Hb_000041_270 Hb_009411_050 Hb_009411_050 Hb_006502_070--Hb_009411_050 Hb_010417_080 Hb_010417_080 Hb_006502_070--Hb_010417_080 Hb_011218_040 Hb_011218_040 Hb_166236_010--Hb_011218_040 Hb_166236_010--Hb_010417_080 Hb_009767_100 Hb_009767_100 Hb_166236_010--Hb_009767_100 Hb_006788_020 Hb_006788_020 Hb_166236_010--Hb_006788_020 Hb_004355_030 Hb_004355_030 Hb_166236_010--Hb_004355_030 Hb_015746_010 Hb_015746_010 Hb_000061_370--Hb_015746_010 Hb_001677_210 Hb_001677_210 Hb_000061_370--Hb_001677_210 Hb_002043_190 Hb_002043_190 Hb_000061_370--Hb_002043_190 Hb_001404_100 Hb_001404_100 Hb_000061_370--Hb_001404_100 Hb_000327_120 Hb_000327_120 Hb_000061_370--Hb_000327_120 Hb_002685_170 Hb_002685_170 Hb_004491_010--Hb_002685_170 Hb_000853_420 Hb_000853_420 Hb_004491_010--Hb_000853_420 Hb_028995_040 Hb_028995_040 Hb_004491_010--Hb_028995_040 Hb_002603_120 Hb_002603_120 Hb_004491_010--Hb_002603_120 Hb_004491_010--Hb_000041_270 Hb_003126_080 Hb_003126_080 Hb_004491_010--Hb_003126_080 Hb_000210_180 Hb_000210_180 Hb_000041_270--Hb_000210_180 Hb_096563_010 Hb_096563_010 Hb_000041_270--Hb_096563_010 Hb_003126_050 Hb_003126_050 Hb_000041_270--Hb_003126_050 Hb_000757_060 Hb_000757_060 Hb_000041_270--Hb_000757_060 Hb_001481_090 Hb_001481_090 Hb_000041_270--Hb_001481_090 Hb_001758_100 Hb_001758_100 Hb_009411_050--Hb_001758_100 Hb_003125_200 Hb_003125_200 Hb_009411_050--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_009411_050--Hb_012389_020 Hb_000771_120 Hb_000771_120 Hb_009411_050--Hb_000771_120 Hb_001178_140 Hb_001178_140 Hb_009411_050--Hb_001178_140 Hb_004577_020 Hb_004577_020 Hb_010417_080--Hb_004577_020 Hb_001221_100 Hb_001221_100 Hb_010417_080--Hb_001221_100 Hb_005064_060 Hb_005064_060 Hb_010417_080--Hb_005064_060 Hb_004046_050 Hb_004046_050 Hb_010417_080--Hb_004046_050 Hb_010417_080--Hb_011218_040 Hb_039946_020 Hb_039946_020 Hb_010417_080--Hb_039946_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68905 1.19286 0.948042 0.661101 1.15081 1.30193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56422 1.70054 1.23796 1.67292 0.224696

CAGE analysis