Hb_009411_050

Information

Type -
Description -
Location Contig9411: 99225-101226
Sequence    

Annotation

kegg
ID tcc:TCM_024484
description Dehydration-induced protein, putative
nr
ID XP_012085962.1
description PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
swissprot
ID Q39096
description Protein EARLY RESPONSIVE TO DEHYDRATION 15 OS=Arabidopsis thaliana GN=ERD15 PE=1 SV=1
trembl
ID A0A067K1V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22456 PE=4 SV=1
Gene Ontology
ID GO:0006970
description protein early responsive to dehydration 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63193: 99232-101228 , PASA_asmbl_63194: 99233-100356
cDNA
(Sanger)
(ID:Location)		 042_G02.ab1: 99233-101228

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009411_050 0.0 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
2 Hb_006502_070 0.0895444157 - - separase, putative [Ricinus communis]
3 Hb_001758_100 0.0990826404 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
4 Hb_003125_200 0.0999649552 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
5 Hb_012389_020 0.1004989133 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
6 Hb_000771_120 0.1035699649 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_001178_140 0.1057256598 - - PREDICTED: uncharacterized protein LOC105629472 isoform X1 [Jatropha curcas]
8 Hb_005365_030 0.1058204737 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
9 Hb_001534_050 0.1080424999 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
10 Hb_000302_270 0.1085348639 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
11 Hb_000039_220 0.1086508661 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
12 Hb_029388_020 0.1089348494 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000120_470 0.1106838218 - - hypothetical protein VITISV_017372 [Vitis vinifera]
14 Hb_001221_100 0.1132719292 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
15 Hb_002685_170 0.1133300276 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
16 Hb_004491_010 0.1139143412 - - 60S ribosomal protein L51, putative [Ricinus communis]
17 Hb_005054_350 0.1143664361 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
18 Hb_001133_120 0.1153887159 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
19 Hb_000041_270 0.1157865 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
20 Hb_000905_060 0.1158992026 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_009411_050 Hb_009411_050 Hb_006502_070 Hb_006502_070 Hb_009411_050--Hb_006502_070 Hb_001758_100 Hb_001758_100 Hb_009411_050--Hb_001758_100 Hb_003125_200 Hb_003125_200 Hb_009411_050--Hb_003125_200 Hb_012389_020 Hb_012389_020 Hb_009411_050--Hb_012389_020 Hb_000771_120 Hb_000771_120 Hb_009411_050--Hb_000771_120 Hb_001178_140 Hb_001178_140 Hb_009411_050--Hb_001178_140 Hb_166236_010 Hb_166236_010 Hb_006502_070--Hb_166236_010 Hb_000061_370 Hb_000061_370 Hb_006502_070--Hb_000061_370 Hb_004491_010 Hb_004491_010 Hb_006502_070--Hb_004491_010 Hb_000041_270 Hb_000041_270 Hb_006502_070--Hb_000041_270 Hb_010417_080 Hb_010417_080 Hb_006502_070--Hb_010417_080 Hb_000120_470 Hb_000120_470 Hb_001758_100--Hb_000120_470 Hb_000504_140 Hb_000504_140 Hb_001758_100--Hb_000504_140 Hb_008900_010 Hb_008900_010 Hb_001758_100--Hb_008900_010 Hb_000465_460 Hb_000465_460 Hb_001758_100--Hb_000465_460 Hb_000317_240 Hb_000317_240 Hb_001758_100--Hb_000317_240 Hb_000757_060 Hb_000757_060 Hb_001758_100--Hb_000757_060 Hb_003125_200--Hb_000465_460 Hb_003125_200--Hb_001758_100 Hb_004931_070 Hb_004931_070 Hb_003125_200--Hb_004931_070 Hb_003125_200--Hb_012389_020 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_004586_140 Hb_004586_140 Hb_012389_020--Hb_004586_140 Hb_012389_020--Hb_004931_070 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_025645_010 Hb_025645_010 Hb_000771_120--Hb_025645_010 Hb_000771_120--Hb_000302_270 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_000085_100 Hb_000085_100 Hb_001178_140--Hb_000085_100 Hb_000859_060 Hb_000859_060 Hb_001178_140--Hb_000859_060 Hb_000629_010 Hb_000629_010 Hb_001178_140--Hb_000629_010 Hb_007813_040 Hb_007813_040 Hb_001178_140--Hb_007813_040 Hb_001892_020 Hb_001892_020 Hb_001178_140--Hb_001892_020 Hb_004204_170 Hb_004204_170 Hb_001178_140--Hb_004204_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.9149 81.8679 88.6237 42.4982 49.8725 93.9688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.057 129.691 92.7523 86.1101 16.0689

CAGE analysis