Hb_004724_190

Information

Type -
Description -
Location Contig4724: 153144-159008
Sequence    

Annotation

kegg
ID pop:POPTR_0004s21160g
description NITRILASE-LIKE protein 1
nr
ID XP_006384793.1
description NITRILASE-LIKE protein 1 [Populus trichocarpa]
swissprot
ID Q3HVN1
description N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1
trembl
ID B9MYV7
description NITRILASE-LIKE protein 1 OS=Populus trichocarpa GN=POPTR_0004s21160g PE=4 SV=1
Gene Ontology
ID GO:0016810
description n-carbamoylputrescine amidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44350: 153143-158942 , PASA_asmbl_44351: 158245-158933 , PASA_asmbl_44352: 156914-157217
cDNA
(Sanger)
(ID:Location)		 009_O23.ab1: 153439-158942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_190 0.0 - - NITRILASE-LIKE protein 1 [Populus trichocarpa]
2 Hb_009133_010 0.078934445 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
3 Hb_001789_240 0.0895842839 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
4 Hb_006692_030 0.1097450324 - - PREDICTED: uncharacterized protein LOC105632913 [Jatropha curcas]
5 Hb_002205_040 0.1124775146 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_008055_040 0.1158587647 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
7 Hb_006816_500 0.1164459004 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
8 Hb_063090_010 0.1185149408 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
9 Hb_001766_150 0.1190260526 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
10 Hb_005608_020 0.1193533765 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
11 Hb_022693_120 0.1195795921 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
12 Hb_003544_090 0.1200811323 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
13 Hb_004453_040 0.1258615819 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
14 Hb_000933_180 0.1265596739 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
15 Hb_010128_130 0.1265789257 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
16 Hb_003333_060 0.1270604518 - - PREDICTED: uncharacterized protein LOC105628461 [Jatropha curcas]
17 Hb_001369_220 0.1280707432 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
18 Hb_000486_010 0.1282911133 - - PREDICTED: uncharacterized protein LOC105646661 isoform X1 [Jatropha curcas]
19 Hb_006502_090 0.1285294263 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
20 Hb_001771_090 0.1288337102 - - PREDICTED: uncharacterized protein LOC105634551 [Jatropha curcas]

Gene co-expression network

sample Hb_004724_190 Hb_004724_190 Hb_009133_010 Hb_009133_010 Hb_004724_190--Hb_009133_010 Hb_001789_240 Hb_001789_240 Hb_004724_190--Hb_001789_240 Hb_006692_030 Hb_006692_030 Hb_004724_190--Hb_006692_030 Hb_002205_040 Hb_002205_040 Hb_004724_190--Hb_002205_040 Hb_008055_040 Hb_008055_040 Hb_004724_190--Hb_008055_040 Hb_006816_500 Hb_006816_500 Hb_004724_190--Hb_006816_500 Hb_009133_010--Hb_006692_030 Hb_009133_010--Hb_001789_240 Hb_063090_010 Hb_063090_010 Hb_009133_010--Hb_063090_010 Hb_005839_060 Hb_005839_060 Hb_009133_010--Hb_005839_060 Hb_000889_020 Hb_000889_020 Hb_009133_010--Hb_000889_020 Hb_001789_240--Hb_063090_010 Hb_000373_240 Hb_000373_240 Hb_001789_240--Hb_000373_240 Hb_001789_240--Hb_006692_030 Hb_001789_240--Hb_002205_040 Hb_002391_300 Hb_002391_300 Hb_001789_240--Hb_002391_300 Hb_000032_570 Hb_000032_570 Hb_006692_030--Hb_000032_570 Hb_007218_080 Hb_007218_080 Hb_006692_030--Hb_007218_080 Hb_006692_030--Hb_000889_020 Hb_000120_500 Hb_000120_500 Hb_006692_030--Hb_000120_500 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120 Hb_001405_120 Hb_001405_120 Hb_008055_040--Hb_001405_120 Hb_001575_100 Hb_001575_100 Hb_008055_040--Hb_001575_100 Hb_000365_120 Hb_000365_120 Hb_008055_040--Hb_000365_120 Hb_000174_110 Hb_000174_110 Hb_008055_040--Hb_000174_110 Hb_156973_010 Hb_156973_010 Hb_008055_040--Hb_156973_010 Hb_002175_030 Hb_002175_030 Hb_008055_040--Hb_002175_030 Hb_000002_330 Hb_000002_330 Hb_006816_500--Hb_000002_330 Hb_000141_060 Hb_000141_060 Hb_006816_500--Hb_000141_060 Hb_143766_090 Hb_143766_090 Hb_006816_500--Hb_143766_090 Hb_010128_130 Hb_010128_130 Hb_006816_500--Hb_010128_130 Hb_000322_050 Hb_000322_050 Hb_006816_500--Hb_000322_050 Hb_003544_090 Hb_003544_090 Hb_006816_500--Hb_003544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03643 0.891613 1.2736 0.647498 2.97589 4.62448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4398 4.48932 1.33454 2.80374 1.55494

CAGE analysis