Hb_002918_060

Information

Type -
Description -
Location Contig2918: 52174-58944
Sequence    

Annotation

kegg
ID rcu:RCOM_1673920
description trypsin domain-containing protein, putative
nr
ID XP_012091640.1
description PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
swissprot
ID Q8VZD4
description Glyoxysomal processing protease, glyoxysomal OS=Arabidopsis thaliana GN=DEG15 PE=1 SV=2
trembl
ID A0A067JB48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21463 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30593: 53715-54718 , PASA_asmbl_30594: 55048-55489 , PASA_asmbl_30595: 57085-58283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_060 0.0 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
2 Hb_000059_140 0.0818223934 - - rnase h, putative [Ricinus communis]
3 Hb_005892_030 0.0847525262 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
4 Hb_140049_030 0.0859249204 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
5 Hb_002422_050 0.0860101843 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
6 Hb_001427_190 0.0870468819 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
7 Hb_002045_150 0.0873896547 - - histone acetyltransferase gcn5, putative [Ricinus communis]
8 Hb_050847_020 0.0911440235 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
9 Hb_001028_070 0.0921814738 - - PREDICTED: WD repeat-containing protein 75 isoform X2 [Jatropha curcas]
10 Hb_000300_360 0.0927311648 - - PREDICTED: exosome component 10 [Jatropha curcas]
11 Hb_001307_080 0.093103261 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
12 Hb_032278_020 0.093237446 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Jatropha curcas]
13 Hb_006658_040 0.0937744319 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]
14 Hb_001511_170 0.0968987116 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
15 Hb_000771_180 0.0975769971 - - polypyrimidine tract binding protein, putative [Ricinus communis]
16 Hb_000914_080 0.0976766345 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_000010_360 0.0977532914 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
18 Hb_005332_020 0.0993065863 transcription factor TF Family: SNF2 dead box ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000270_460 0.099606276 - - PREDICTED: anaphase-promoting complex subunit 8 [Jatropha curcas]
20 Hb_011930_080 0.1010738341 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_060 Hb_002918_060 Hb_000059_140 Hb_000059_140 Hb_002918_060--Hb_000059_140 Hb_005892_030 Hb_005892_030 Hb_002918_060--Hb_005892_030 Hb_140049_030 Hb_140049_030 Hb_002918_060--Hb_140049_030 Hb_002422_050 Hb_002422_050 Hb_002918_060--Hb_002422_050 Hb_001427_190 Hb_001427_190 Hb_002918_060--Hb_001427_190 Hb_002045_150 Hb_002045_150 Hb_002918_060--Hb_002045_150 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_001357_380 Hb_001357_380 Hb_000059_140--Hb_001357_380 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_001486_340 Hb_001486_340 Hb_000059_140--Hb_001486_340 Hb_000714_050 Hb_000714_050 Hb_005892_030--Hb_000714_050 Hb_000329_130 Hb_000329_130 Hb_005892_030--Hb_000329_130 Hb_007558_120 Hb_007558_120 Hb_005892_030--Hb_007558_120 Hb_005892_030--Hb_000059_140 Hb_010381_060 Hb_010381_060 Hb_005892_030--Hb_010381_060 Hb_002749_110 Hb_002749_110 Hb_005892_030--Hb_002749_110 Hb_140049_030--Hb_002045_150 Hb_000771_180 Hb_000771_180 Hb_140049_030--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_140049_030--Hb_000300_360 Hb_050847_020 Hb_050847_020 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_001417_050 Hb_001417_050 Hb_002422_050--Hb_001417_050 Hb_004453_110 Hb_004453_110 Hb_002422_050--Hb_004453_110 Hb_001493_040 Hb_001493_040 Hb_002422_050--Hb_001493_040 Hb_000152_260 Hb_000152_260 Hb_002422_050--Hb_000152_260 Hb_005332_020 Hb_005332_020 Hb_002422_050--Hb_005332_020 Hb_000010_360 Hb_000010_360 Hb_002422_050--Hb_000010_360 Hb_011930_080 Hb_011930_080 Hb_001427_190--Hb_011930_080 Hb_001935_110 Hb_001935_110 Hb_001427_190--Hb_001935_110 Hb_001427_190--Hb_000152_260 Hb_019654_040 Hb_019654_040 Hb_001427_190--Hb_019654_040 Hb_002078_100 Hb_002078_100 Hb_001427_190--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_001427_190--Hb_002888_070 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_050847_020 Hb_002045_150--Hb_000771_180 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44834 0.9547 0.846072 0.389207 1.64214 1.47339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.701162 0.643637 0.278739 1.22218 0.621236

CAGE analysis