Hb_000010_250

Information

Type -
Description -
Location Contig10: 273856-276816
Sequence    

Annotation

kegg
ID pop:POPTR_0015s09870g
description POPTRDRAFT_575266; transducin family protein
nr
ID XP_012079939.1
description PREDICTED: protein tipD [Jatropha curcas]
swissprot
ID O15736
description Protein tipD OS=Dictyostelium discoideum GN=tipD PE=3 SV=1
trembl
ID A0A067KGM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11375 PE=4 SV=1
Gene Ontology
ID GO:0016905
description protein tipd

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00157: 267338-273221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000010_250 0.0 - - PREDICTED: protein tipD [Jatropha curcas]
2 Hb_001089_020 0.1225207069 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
3 Hb_000457_100 0.1333651534 - - prohibitin, putative [Ricinus communis]
4 Hb_001481_090 0.1359857291 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
5 Hb_004453_040 0.1388010882 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
6 Hb_000679_060 0.1409442114 - - ADP,ATP carrier protein, putative [Ricinus communis]
7 Hb_003752_080 0.1416683418 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
8 Hb_008055_040 0.1468988034 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
9 Hb_007803_010 0.1469798046 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
10 Hb_003073_200 0.1517941871 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
11 Hb_002783_310 0.1547335264 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
12 Hb_008103_070 0.154901736 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
13 Hb_094022_010 0.1550260532 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
14 Hb_007576_080 0.1552039135 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
15 Hb_005276_210 0.156340905 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
16 Hb_004787_110 0.157447067 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000421_070 0.1581747831 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_038172_010 0.1586303294 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
19 Hb_002675_260 0.1596001946 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
20 Hb_002205_040 0.16039252 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000010_250 Hb_000010_250 Hb_001089_020 Hb_001089_020 Hb_000010_250--Hb_001089_020 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_004453_040 Hb_004453_040 Hb_000010_250--Hb_004453_040 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_111198_020 Hb_111198_020 Hb_001089_020--Hb_111198_020 Hb_001089_020--Hb_004453_040 Hb_005271_190 Hb_005271_190 Hb_001089_020--Hb_005271_190 Hb_002918_060 Hb_002918_060 Hb_001089_020--Hb_002918_060 Hb_011512_090 Hb_011512_090 Hb_001089_020--Hb_011512_090 Hb_027472_040 Hb_027472_040 Hb_000457_100--Hb_027472_040 Hb_000457_100--Hb_001481_090 Hb_007576_080 Hb_007576_080 Hb_000457_100--Hb_007576_080 Hb_004837_240 Hb_004837_240 Hb_000457_100--Hb_004837_240 Hb_003935_020 Hb_003935_020 Hb_000457_100--Hb_003935_020 Hb_002585_040 Hb_002585_040 Hb_000457_100--Hb_002585_040 Hb_001766_110 Hb_001766_110 Hb_001481_090--Hb_001766_110 Hb_000041_270 Hb_000041_270 Hb_001481_090--Hb_000041_270 Hb_038172_010 Hb_038172_010 Hb_001481_090--Hb_038172_010 Hb_003952_090 Hb_003952_090 Hb_001481_090--Hb_003952_090 Hb_003126_080 Hb_003126_080 Hb_001481_090--Hb_003126_080 Hb_000656_400 Hb_000656_400 Hb_001481_090--Hb_000656_400 Hb_004724_190 Hb_004724_190 Hb_004453_040--Hb_004724_190 Hb_008055_040 Hb_008055_040 Hb_004453_040--Hb_008055_040 Hb_000261_260 Hb_000261_260 Hb_004453_040--Hb_000261_260 Hb_002205_040 Hb_002205_040 Hb_004453_040--Hb_002205_040 Hb_002217_510 Hb_002217_510 Hb_000679_060--Hb_002217_510 Hb_002338_020 Hb_002338_020 Hb_000679_060--Hb_002338_020 Hb_000589_260 Hb_000589_260 Hb_000679_060--Hb_000589_260 Hb_007423_040 Hb_007423_040 Hb_000679_060--Hb_007423_040 Hb_017002_020 Hb_017002_020 Hb_000679_060--Hb_017002_020 Hb_002233_150 Hb_002233_150 Hb_003752_080--Hb_002233_150 Hb_002687_140 Hb_002687_140 Hb_003752_080--Hb_002687_140 Hb_001348_070 Hb_001348_070 Hb_003752_080--Hb_001348_070 Hb_001047_100 Hb_001047_100 Hb_003752_080--Hb_001047_100 Hb_002495_070 Hb_002495_070 Hb_003752_080--Hb_002495_070 Hb_001405_120 Hb_001405_120 Hb_003752_080--Hb_001405_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.481 2.51917 1.35751 0.559231 4.68003 1.6932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6309 3.86374 1.12584 3.66923 1.01275

CAGE analysis