Hb_004453_040

Information

Type -
Description -
Location Contig4453: 27120-28855
Sequence    

Annotation

kegg
ID pxb:103946801
description UPF0481 protein At3g47200-like
nr
ID XP_009355872.1
description PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID A0A067FIB7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042051mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42967: 28097-28344 , PASA_asmbl_42968: 28724-29320
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_040 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]
2 Hb_004724_190 0.1258615819 - - NITRILASE-LIKE protein 1 [Populus trichocarpa]
3 Hb_001089_020 0.130386217 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
4 Hb_008055_040 0.1334307279 - - PREDICTED: chromatin assembly factor 1 subunit FAS2 [Jatropha curcas]
5 Hb_000010_250 0.1388010882 - - PREDICTED: protein tipD [Jatropha curcas]
6 Hb_000261_260 0.1399458569 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
7 Hb_002205_040 0.142167751 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000748_080 0.1432272842 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
9 Hb_006816_500 0.1485063785 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
10 Hb_094022_010 0.1523725345 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
11 Hb_001405_120 0.1526794561 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
12 Hb_009133_010 0.1570347437 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
13 Hb_052764_090 0.1582353581 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003752_080 0.159593655 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
15 Hb_005608_020 0.1611402724 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
16 Hb_001789_240 0.1627381844 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
17 Hb_004097_050 0.163264981 - - PREDICTED: squalene monooxygenase-like [Jatropha curcas]
18 Hb_003398_130 0.1635187695 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL30 [Gossypium raimondii]
19 Hb_001021_230 0.1638227094 - - -
20 Hb_002067_040 0.1645855372 - - dihydrodipicolinate reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004453_040 Hb_004453_040 Hb_004724_190 Hb_004724_190 Hb_004453_040--Hb_004724_190 Hb_001089_020 Hb_001089_020 Hb_004453_040--Hb_001089_020 Hb_008055_040 Hb_008055_040 Hb_004453_040--Hb_008055_040 Hb_000010_250 Hb_000010_250 Hb_004453_040--Hb_000010_250 Hb_000261_260 Hb_000261_260 Hb_004453_040--Hb_000261_260 Hb_002205_040 Hb_002205_040 Hb_004453_040--Hb_002205_040 Hb_009133_010 Hb_009133_010 Hb_004724_190--Hb_009133_010 Hb_001789_240 Hb_001789_240 Hb_004724_190--Hb_001789_240 Hb_006692_030 Hb_006692_030 Hb_004724_190--Hb_006692_030 Hb_004724_190--Hb_002205_040 Hb_004724_190--Hb_008055_040 Hb_006816_500 Hb_006816_500 Hb_004724_190--Hb_006816_500 Hb_001089_020--Hb_000010_250 Hb_111198_020 Hb_111198_020 Hb_001089_020--Hb_111198_020 Hb_005271_190 Hb_005271_190 Hb_001089_020--Hb_005271_190 Hb_002918_060 Hb_002918_060 Hb_001089_020--Hb_002918_060 Hb_011512_090 Hb_011512_090 Hb_001089_020--Hb_011512_090 Hb_001405_120 Hb_001405_120 Hb_008055_040--Hb_001405_120 Hb_001575_100 Hb_001575_100 Hb_008055_040--Hb_001575_100 Hb_000365_120 Hb_000365_120 Hb_008055_040--Hb_000365_120 Hb_000174_110 Hb_000174_110 Hb_008055_040--Hb_000174_110 Hb_156973_010 Hb_156973_010 Hb_008055_040--Hb_156973_010 Hb_002175_030 Hb_002175_030 Hb_008055_040--Hb_002175_030 Hb_000457_100 Hb_000457_100 Hb_000010_250--Hb_000457_100 Hb_001481_090 Hb_001481_090 Hb_000010_250--Hb_001481_090 Hb_000679_060 Hb_000679_060 Hb_000010_250--Hb_000679_060 Hb_003752_080 Hb_003752_080 Hb_000010_250--Hb_003752_080 Hb_012799_130 Hb_012799_130 Hb_000261_260--Hb_012799_130 Hb_002067_040 Hb_002067_040 Hb_000261_260--Hb_002067_040 Hb_002289_100 Hb_002289_100 Hb_000261_260--Hb_002289_100 Hb_003159_080 Hb_003159_080 Hb_000261_260--Hb_003159_080 Hb_005608_020 Hb_005608_020 Hb_000261_260--Hb_005608_020 Hb_000748_080 Hb_000748_080 Hb_000261_260--Hb_000748_080 Hb_023386_040 Hb_023386_040 Hb_002205_040--Hb_023386_040 Hb_002890_020 Hb_002890_020 Hb_002205_040--Hb_002890_020 Hb_001014_050 Hb_001014_050 Hb_002205_040--Hb_001014_050 Hb_000926_190 Hb_000926_190 Hb_002205_040--Hb_000926_190 Hb_000207_310 Hb_000207_310 Hb_002205_040--Hb_000207_310 Hb_022693_120 Hb_022693_120 Hb_002205_040--Hb_022693_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531053 0.185717 0.160494 0.0482225 0.572932 0.455692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.377658 0.519824 0.0685919 0.492093 0.228781

CAGE analysis