Hb_002289_100

Information

Type -
Description -
Location Contig2289: 77794-81946
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04980g
description POPTRDRAFT_560508; hypothetical protein
nr
ID XP_012086153.1
description PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
swissprot
ID O65628
description Cytoplasmic tRNA 2-thiolation protein 2 OS=Arabidopsis thaliana GN=CTU2 PE=2 SV=3
trembl
ID A0A067JQ14
description Cytoplasmic tRNA 2-thiolation protein 2 OS=Jatropha curcas GN=JCGZ_21084 PE=3 SV=1
Gene Ontology
ID GO:0000049
description cytoplasmic trna 2-thiolation protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_100 0.0 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
2 Hb_000261_260 0.1157586901 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
3 Hb_002078_200 0.1188382912 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
4 Hb_001178_070 0.1341700251 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
5 Hb_002972_020 0.1346477321 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
6 Hb_009486_180 0.1386648692 - - unknown [Glycine max]
7 Hb_001232_010 0.1442519603 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
8 Hb_000521_050 0.1460296896 - - PREDICTED: major facilitator superfamily domain-containing protein 12-like isoform X1 [Jatropha curcas]
9 Hb_164544_010 0.1462022149 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
10 Hb_000347_440 0.1483756613 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
11 Hb_000345_240 0.1497679685 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
12 Hb_000011_230 0.1504077886 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
13 Hb_000031_120 0.1508568675 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
14 Hb_003813_050 0.1522339369 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
15 Hb_004787_110 0.1528245101 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000900_030 0.1529363633 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
17 Hb_005608_020 0.1530281183 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
18 Hb_000200_120 0.154470862 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
19 Hb_000252_170 0.1550479633 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
20 Hb_001190_070 0.1554011885 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]

Gene co-expression network

sample Hb_002289_100 Hb_002289_100 Hb_000261_260 Hb_000261_260 Hb_002289_100--Hb_000261_260 Hb_002078_200 Hb_002078_200 Hb_002289_100--Hb_002078_200 Hb_001178_070 Hb_001178_070 Hb_002289_100--Hb_001178_070 Hb_002972_020 Hb_002972_020 Hb_002289_100--Hb_002972_020 Hb_009486_180 Hb_009486_180 Hb_002289_100--Hb_009486_180 Hb_001232_010 Hb_001232_010 Hb_002289_100--Hb_001232_010 Hb_012799_130 Hb_012799_130 Hb_000261_260--Hb_012799_130 Hb_002067_040 Hb_002067_040 Hb_000261_260--Hb_002067_040 Hb_003159_080 Hb_003159_080 Hb_000261_260--Hb_003159_080 Hb_005608_020 Hb_005608_020 Hb_000261_260--Hb_005608_020 Hb_000748_080 Hb_000748_080 Hb_000261_260--Hb_000748_080 Hb_007017_030 Hb_007017_030 Hb_002078_200--Hb_007017_030 Hb_003813_050 Hb_003813_050 Hb_002078_200--Hb_003813_050 Hb_004109_310 Hb_004109_310 Hb_002078_200--Hb_004109_310 Hb_002197_050 Hb_002197_050 Hb_002078_200--Hb_002197_050 Hb_008406_190 Hb_008406_190 Hb_002078_200--Hb_008406_190 Hb_000466_140 Hb_000466_140 Hb_002078_200--Hb_000466_140 Hb_001178_070--Hb_009486_180 Hb_000205_100 Hb_000205_100 Hb_001178_070--Hb_000205_100 Hb_000011_230 Hb_000011_230 Hb_001178_070--Hb_000011_230 Hb_000613_050 Hb_000613_050 Hb_001178_070--Hb_000613_050 Hb_004954_070 Hb_004954_070 Hb_001178_070--Hb_004954_070 Hb_000181_400 Hb_000181_400 Hb_001178_070--Hb_000181_400 Hb_011512_090 Hb_011512_090 Hb_002972_020--Hb_011512_090 Hb_001427_070 Hb_001427_070 Hb_002972_020--Hb_001427_070 Hb_001089_040 Hb_001089_040 Hb_002972_020--Hb_001089_040 Hb_001009_080 Hb_001009_080 Hb_002972_020--Hb_001009_080 Hb_002972_020--Hb_001232_010 Hb_000140_480 Hb_000140_480 Hb_002972_020--Hb_000140_480 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_009486_180--Hb_000011_230 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_001062_010 Hb_001062_010 Hb_009486_180--Hb_001062_010 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.577734 0.367654 0.205652 0.485687 1.02768 0.794532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418921 0.966804 0.331427 1.44534 0.369165

CAGE analysis