Hb_001089_040

Information

Type transcription factor
Description TF Family: bHLH
Location Contig1089: 24063-28943
Sequence    

Annotation

kegg
ID rcu:RCOM_0708760
description DNA-directed RNA polymerase beta chain, putative
nr
ID XP_002516201.1
description DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
swissprot
ID Q9LSQ3
description Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1
trembl
ID B9RR32
description DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_0708760 PE=3 SV=1
Gene Ontology
ID GO:0005488
description transcription factor bhlh68-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02697: 19455-23386 , PASA_asmbl_02699: 25364-25531 , PASA_asmbl_02700: 25841-27983
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_040 0.0 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
2 Hb_002972_020 0.119500045 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
3 Hb_000347_440 0.1373951325 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
4 Hb_077562_030 0.1534748442 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
5 Hb_001427_070 0.15361667 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
6 Hb_000140_480 0.1554013899 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
7 Hb_001246_030 0.1636760823 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
8 Hb_022400_010 0.1637442838 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
9 Hb_000599_100 0.165014339 - - hypothetical protein B456_001G254000 [Gossypium raimondii]
10 Hb_134469_010 0.165599769 - - PREDICTED: protein argonaute 5 isoform X1 [Jatropha curcas]
11 Hb_008864_090 0.1664928795 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
12 Hb_004586_350 0.1677303389 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
13 Hb_002693_060 0.1692629534 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
14 Hb_001761_130 0.1702235057 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
15 Hb_002289_100 0.171827053 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
16 Hb_005228_130 0.172806949 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_001268_110 0.1734514271 - - PREDICTED: uncharacterized protein LOC105630183 isoform X2 [Jatropha curcas]
18 Hb_000684_290 0.1734845752 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
19 Hb_001232_010 0.1758478858 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
20 Hb_002005_100 0.1781999415 - - -

Gene co-expression network

sample Hb_001089_040 Hb_001089_040 Hb_002972_020 Hb_002972_020 Hb_001089_040--Hb_002972_020 Hb_000347_440 Hb_000347_440 Hb_001089_040--Hb_000347_440 Hb_077562_030 Hb_077562_030 Hb_001089_040--Hb_077562_030 Hb_001427_070 Hb_001427_070 Hb_001089_040--Hb_001427_070 Hb_000140_480 Hb_000140_480 Hb_001089_040--Hb_000140_480 Hb_001246_030 Hb_001246_030 Hb_001089_040--Hb_001246_030 Hb_011512_090 Hb_011512_090 Hb_002972_020--Hb_011512_090 Hb_002972_020--Hb_001427_070 Hb_001009_080 Hb_001009_080 Hb_002972_020--Hb_001009_080 Hb_001232_010 Hb_001232_010 Hb_002972_020--Hb_001232_010 Hb_002972_020--Hb_000140_480 Hb_006913_010 Hb_006913_010 Hb_000347_440--Hb_006913_010 Hb_000347_440--Hb_000140_480 Hb_004109_310 Hb_004109_310 Hb_000347_440--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_000347_440--Hb_000023_280 Hb_000252_200 Hb_000252_200 Hb_000347_440--Hb_000252_200 Hb_000676_190 Hb_000676_190 Hb_000347_440--Hb_000676_190 Hb_008147_070 Hb_008147_070 Hb_077562_030--Hb_008147_070 Hb_172632_110 Hb_172632_110 Hb_077562_030--Hb_172632_110 Hb_001761_130 Hb_001761_130 Hb_077562_030--Hb_001761_130 Hb_002477_090 Hb_002477_090 Hb_077562_030--Hb_002477_090 Hb_077562_030--Hb_001232_010 Hb_000684_290 Hb_000684_290 Hb_077562_030--Hb_000684_290 Hb_001427_070--Hb_000140_480 Hb_001427_070--Hb_001761_130 Hb_000152_660 Hb_000152_660 Hb_001427_070--Hb_000152_660 Hb_006831_040 Hb_006831_040 Hb_001427_070--Hb_006831_040 Hb_002391_210 Hb_002391_210 Hb_001427_070--Hb_002391_210 Hb_002110_030 Hb_002110_030 Hb_001427_070--Hb_002110_030 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_000140_480--Hb_001761_130 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310 Hb_014894_010 Hb_014894_010 Hb_001246_030--Hb_014894_010 Hb_001157_110 Hb_001157_110 Hb_001246_030--Hb_001157_110 Hb_000497_110 Hb_000497_110 Hb_001246_030--Hb_000497_110 Hb_098315_080 Hb_098315_080 Hb_001246_030--Hb_098315_080 Hb_119494_010 Hb_119494_010 Hb_001246_030--Hb_119494_010 Hb_002005_100 Hb_002005_100 Hb_001246_030--Hb_002005_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.76245 5.29035 0.668103 5.59945 4.27437 9.08648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.37245 6.43028 5.20396 19.2635 3.14421

CAGE analysis