Hb_000676_190

Information

Type -
Description -
Location Contig676: 129017-142327
Sequence    

Annotation

kegg
ID rcu:RCOM_0533320
description d-lactate dehydrognease 2, putative (EC:1.1.2.4)
nr
ID KDP37438.1
description hypothetical protein JCGZ_08279 [Jatropha curcas]
swissprot
ID O23240
description D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=D2HGDH PE=1 SV=3
trembl
ID A0A067KQZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08279 PE=4 SV=1
Gene Ontology
ID GO:0004458
description d-2-hydroxyglutarate mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53570: 129023-142295 , PASA_asmbl_53571: 141435-142248
cDNA
(Sanger)
(ID:Location)		 038_E22.ab1: 141435-142229

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_190 0.0 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
2 Hb_001018_050 0.1030579924 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
3 Hb_000347_440 0.1097408422 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
4 Hb_000140_480 0.1197027999 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
5 Hb_000152_660 0.121955088 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
6 Hb_006913_010 0.1354752538 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
7 Hb_003044_030 0.1407599524 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
8 Hb_003090_100 0.1446780102 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
9 Hb_001232_010 0.1449546965 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
10 Hb_002889_030 0.1452382253 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
11 Hb_001021_080 0.1454737239 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
12 Hb_001840_090 0.1457220997 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_000903_060 0.1468809185 - - PREDICTED: ras-related protein RABA5e [Jatropha curcas]
14 Hb_001427_070 0.1512263732 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
15 Hb_003813_050 0.1517793678 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
16 Hb_001922_050 0.153975583 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
17 Hb_001157_090 0.1541309736 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
18 Hb_003647_130 0.1549157501 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
19 Hb_001123_320 0.1557848996 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
20 Hb_000200_120 0.1568031112 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000676_190 Hb_000676_190 Hb_001018_050 Hb_001018_050 Hb_000676_190--Hb_001018_050 Hb_000347_440 Hb_000347_440 Hb_000676_190--Hb_000347_440 Hb_000140_480 Hb_000140_480 Hb_000676_190--Hb_000140_480 Hb_000152_660 Hb_000152_660 Hb_000676_190--Hb_000152_660 Hb_006913_010 Hb_006913_010 Hb_000676_190--Hb_006913_010 Hb_003044_030 Hb_003044_030 Hb_000676_190--Hb_003044_030 Hb_001018_050--Hb_000152_660 Hb_001252_120 Hb_001252_120 Hb_001018_050--Hb_001252_120 Hb_001157_090 Hb_001157_090 Hb_001018_050--Hb_001157_090 Hb_073973_100 Hb_073973_100 Hb_001018_050--Hb_073973_100 Hb_000903_060 Hb_000903_060 Hb_001018_050--Hb_000903_060 Hb_010142_030 Hb_010142_030 Hb_001018_050--Hb_010142_030 Hb_000347_440--Hb_006913_010 Hb_000347_440--Hb_000140_480 Hb_004109_310 Hb_004109_310 Hb_000347_440--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_000347_440--Hb_000023_280 Hb_000252_200 Hb_000252_200 Hb_000347_440--Hb_000252_200 Hb_001427_070 Hb_001427_070 Hb_000140_480--Hb_001427_070 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_001761_130 Hb_001761_130 Hb_000140_480--Hb_001761_130 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310 Hb_002344_060 Hb_002344_060 Hb_000152_660--Hb_002344_060 Hb_000152_660--Hb_001157_090 Hb_000152_660--Hb_000739_100 Hb_002391_210 Hb_002391_210 Hb_000152_660--Hb_002391_210 Hb_006913_010--Hb_004109_310 Hb_006913_010--Hb_073973_100 Hb_011671_180 Hb_011671_180 Hb_006913_010--Hb_011671_180 Hb_007017_030 Hb_007017_030 Hb_006913_010--Hb_007017_030 Hb_006913_010--Hb_000252_200 Hb_001021_080 Hb_001021_080 Hb_003044_030--Hb_001021_080 Hb_000071_070 Hb_000071_070 Hb_003044_030--Hb_000071_070 Hb_003044_030--Hb_000152_660 Hb_004064_010 Hb_004064_010 Hb_003044_030--Hb_004064_010 Hb_002028_220 Hb_002028_220 Hb_003044_030--Hb_002028_220 Hb_000402_190 Hb_000402_190 Hb_003044_030--Hb_000402_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0248 6.52726 4.1586 8.41287 7.17363 4.6691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42129 8.69278 9.16908 20.3493 1.65066

CAGE analysis