Hb_002067_040

Information

Type -
Description -
Location Contig2067: 27272-31229
Sequence    

Annotation

kegg
ID rcu:RCOM_0211410
description dihydrodipicolinate reductase, putative (EC:1.3.1.26)
nr
ID XP_002533348.1
description dihydrodipicolinate reductase, putative [Ricinus communis]
swissprot
ID Q8LB01
description 4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=DAPB2 PE=2 SV=1
trembl
ID B9T529
description Dihydrodipicolinate reductase, putative OS=Ricinus communis GN=RCOM_0211410 PE=4 SV=1
Gene Ontology
ID GO:0008839
description 4-hydroxy-tetrahydrodipicolinate reductase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_040 0.0 - - dihydrodipicolinate reductase, putative [Ricinus communis]
2 Hb_002272_180 0.070637179 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
3 Hb_000322_050 0.0920100778 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
4 Hb_003025_020 0.0932615658 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000076_270 0.0976642587 - - PREDICTED: DDRGK domain-containing protein 1 [Populus euphratica]
6 Hb_000429_200 0.1003988978 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
7 Hb_012490_030 0.1008358113 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
8 Hb_020719_030 0.1013804696 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
9 Hb_004198_010 0.1022761411 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
10 Hb_089032_020 0.1035588691 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]
11 Hb_000956_030 0.1044740648 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_012799_130 0.106717821 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
13 Hb_000261_260 0.108328157 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
14 Hb_003506_080 0.1083855813 - - dipeptidyl peptidase IV, putative [Ricinus communis]
15 Hb_009118_010 0.1097952254 - - methionine aminopeptidase, putative [Ricinus communis]
16 Hb_002081_130 0.1098640237 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_001221_040 0.1099880998 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
18 Hb_066182_010 0.1103542408 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
19 Hb_004450_010 0.1104894709 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
20 Hb_040262_010 0.1120353532 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_002067_040 Hb_002067_040 Hb_002272_180 Hb_002272_180 Hb_002067_040--Hb_002272_180 Hb_000322_050 Hb_000322_050 Hb_002067_040--Hb_000322_050 Hb_003025_020 Hb_003025_020 Hb_002067_040--Hb_003025_020 Hb_000076_270 Hb_000076_270 Hb_002067_040--Hb_000076_270 Hb_000429_200 Hb_000429_200 Hb_002067_040--Hb_000429_200 Hb_012490_030 Hb_012490_030 Hb_002067_040--Hb_012490_030 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_003453_020 Hb_003453_020 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_003728_020 Hb_003728_020 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_002081_130 Hb_002081_130 Hb_003025_020--Hb_002081_130 Hb_066182_010 Hb_066182_010 Hb_003025_020--Hb_066182_010 Hb_002149_020 Hb_002149_020 Hb_003025_020--Hb_002149_020 Hb_002043_190 Hb_002043_190 Hb_003025_020--Hb_002043_190 Hb_009838_090 Hb_009838_090 Hb_003025_020--Hb_009838_090 Hb_001341_120 Hb_001341_120 Hb_000076_270--Hb_001341_120 Hb_002273_130 Hb_002273_130 Hb_000076_270--Hb_002273_130 Hb_001300_070 Hb_001300_070 Hb_000076_270--Hb_001300_070 Hb_091384_010 Hb_091384_010 Hb_000076_270--Hb_091384_010 Hb_000913_050 Hb_000913_050 Hb_000076_270--Hb_000913_050 Hb_000076_270--Hb_002272_180 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000358_250 Hb_000358_250 Hb_000429_200--Hb_000358_250 Hb_000116_180 Hb_000116_180 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.88184 1.84922 2.64516 2.66154 10.3316 9.75918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.59687 5.42753 2.74579 6.21034 1.96063

CAGE analysis