Hb_003159_080

Information

Type -
Description -
Location Contig3159: 139716-153655
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06220g
description POPTRDRAFT_578418; hypothetical protein
nr
ID XP_012078669.1
description PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13241 PE=4 SV=1
Gene Ontology
ID GO:0016706
description PREDICTED: uncharacterized protein LOC105639276

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33294: 140720-152642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_080 0.0 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
2 Hb_004223_090 0.0734451754 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FC isoform X2 [Jatropha curcas]
3 Hb_005539_030 0.094967884 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
4 Hb_015292_030 0.095890775 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
5 Hb_000003_160 0.0970007966 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
6 Hb_039946_020 0.1017566169 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000169_010 0.1022686595 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
8 Hb_001571_040 0.103080097 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
9 Hb_000057_200 0.1038153597 - - PREDICTED: methyltransferase-like protein 22 [Jatropha curcas]
10 Hb_012022_030 0.1057894354 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
11 Hb_000720_120 0.1069152335 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
12 Hb_000205_160 0.1070481491 - - Peroxisome biogenesis protein 12 [Morus notabilis]
13 Hb_001329_220 0.107238759 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001790_020 0.1074815463 - - PREDICTED: uncharacterized protein LOC105642165 [Jatropha curcas]
15 Hb_123475_010 0.1075851882 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
16 Hb_003777_270 0.1081464751 - - 60S ribosomal protein L3B [Hevea brasiliensis]
17 Hb_000061_370 0.1091031106 - - PREDICTED: zinc finger RNA-binding protein [Vitis vinifera]
18 Hb_003120_030 0.1103978086 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
19 Hb_000032_570 0.1108194155 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
20 Hb_002081_130 0.1115185332 - - serine carboxypeptidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003159_080 Hb_003159_080 Hb_004223_090 Hb_004223_090 Hb_003159_080--Hb_004223_090 Hb_005539_030 Hb_005539_030 Hb_003159_080--Hb_005539_030 Hb_015292_030 Hb_015292_030 Hb_003159_080--Hb_015292_030 Hb_000003_160 Hb_000003_160 Hb_003159_080--Hb_000003_160 Hb_039946_020 Hb_039946_020 Hb_003159_080--Hb_039946_020 Hb_000169_010 Hb_000169_010 Hb_003159_080--Hb_000169_010 Hb_003777_270 Hb_003777_270 Hb_004223_090--Hb_003777_270 Hb_000923_020 Hb_000923_020 Hb_004223_090--Hb_000923_020 Hb_000099_240 Hb_000099_240 Hb_004223_090--Hb_000099_240 Hb_000057_200 Hb_000057_200 Hb_004223_090--Hb_000057_200 Hb_004223_090--Hb_039946_020 Hb_005539_030--Hb_000169_010 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_000638_080 Hb_000638_080 Hb_005539_030--Hb_000638_080 Hb_007254_040 Hb_007254_040 Hb_005539_030--Hb_007254_040 Hb_018838_030 Hb_018838_030 Hb_015292_030--Hb_018838_030 Hb_000032_290 Hb_000032_290 Hb_015292_030--Hb_000032_290 Hb_001790_020 Hb_001790_020 Hb_015292_030--Hb_001790_020 Hb_002137_020 Hb_002137_020 Hb_015292_030--Hb_002137_020 Hb_015292_030--Hb_039946_020 Hb_003994_240 Hb_003994_240 Hb_015292_030--Hb_003994_240 Hb_027295_010 Hb_027295_010 Hb_000003_160--Hb_027295_010 Hb_003615_010 Hb_003615_010 Hb_000003_160--Hb_003615_010 Hb_000640_240 Hb_000640_240 Hb_000003_160--Hb_000640_240 Hb_010691_060 Hb_010691_060 Hb_000003_160--Hb_010691_060 Hb_000041_270 Hb_000041_270 Hb_000003_160--Hb_000041_270 Hb_003058_130 Hb_003058_130 Hb_000003_160--Hb_003058_130 Hb_012022_030 Hb_012022_030 Hb_039946_020--Hb_012022_030 Hb_000629_010 Hb_000629_010 Hb_039946_020--Hb_000629_010 Hb_000062_240 Hb_000062_240 Hb_039946_020--Hb_000062_240 Hb_039946_020--Hb_003615_010 Hb_002026_180 Hb_002026_180 Hb_039946_020--Hb_002026_180 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.18079 2.59564 1.37302 1.64038 4.60573 5.82297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30765 5.44593 2.65119 5.389 0.690438

CAGE analysis