Hb_000261_260

Information

Type -
Description -
Location Contig261: 209320-230964
Sequence    

Annotation

kegg
ID csv:101220517
description uncharacterized LOC101220517
nr
ID XP_011031813.1
description PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
swissprot
ID O49169
description Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1
trembl
ID A0A0D3FEJ1
description Uncharacterized protein OS=Oryza barthii PE=4 SV=1
Gene Ontology
ID GO:0003746
description elongation factor 1-alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27280: 220178-256474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_260 0.0 - - PREDICTED: LOW QUALITY PROTEIN: HBS1-like protein [Populus euphratica]
2 Hb_012799_130 0.1081449333 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
3 Hb_002067_040 0.108328157 - - dihydrodipicolinate reductase, putative [Ricinus communis]
4 Hb_002289_100 0.1157586901 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
5 Hb_003159_080 0.1219547405 - - PREDICTED: uncharacterized protein LOC105639276 [Jatropha curcas]
6 Hb_005608_020 0.1250578337 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
7 Hb_000748_080 0.1277882055 - - hypothetical protein OsI_28173 [Oryza sativa Indica Group]
8 Hb_007803_010 0.1279703495 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
9 Hb_040262_010 0.1294178602 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_003073_200 0.131274329 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
11 Hb_000003_160 0.1316490657 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
12 Hb_000315_120 0.1330443934 - - -
13 Hb_012490_030 0.1331877758 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
14 Hb_002205_040 0.1331981444 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_001369_220 0.1336887351 - - PREDICTED: structural maintenance of chromosomes protein 6B-like isoform X2 [Jatropha curcas]
16 Hb_000189_340 0.133871295 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
17 Hb_006157_020 0.1348092068 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
18 Hb_002081_130 0.1351531197 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_001405_120 0.135398967 - - PREDICTED: eukaryotic translation initiation factor 3 subunit H [Jatropha curcas]
20 Hb_089032_020 0.1355740533 - - PREDICTED: BRCA1-associated protein [Jatropha curcas]

Gene co-expression network

sample Hb_000261_260 Hb_000261_260 Hb_012799_130 Hb_012799_130 Hb_000261_260--Hb_012799_130 Hb_002067_040 Hb_002067_040 Hb_000261_260--Hb_002067_040 Hb_002289_100 Hb_002289_100 Hb_000261_260--Hb_002289_100 Hb_003159_080 Hb_003159_080 Hb_000261_260--Hb_003159_080 Hb_005608_020 Hb_005608_020 Hb_000261_260--Hb_005608_020 Hb_000748_080 Hb_000748_080 Hb_000261_260--Hb_000748_080 Hb_010691_060 Hb_010691_060 Hb_012799_130--Hb_010691_060 Hb_002272_180 Hb_002272_180 Hb_012799_130--Hb_002272_180 Hb_185830_020 Hb_185830_020 Hb_012799_130--Hb_185830_020 Hb_012490_030 Hb_012490_030 Hb_012799_130--Hb_012490_030 Hb_006157_020 Hb_006157_020 Hb_012799_130--Hb_006157_020 Hb_004881_020 Hb_004881_020 Hb_012799_130--Hb_004881_020 Hb_002067_040--Hb_002272_180 Hb_000322_050 Hb_000322_050 Hb_002067_040--Hb_000322_050 Hb_003025_020 Hb_003025_020 Hb_002067_040--Hb_003025_020 Hb_000076_270 Hb_000076_270 Hb_002067_040--Hb_000076_270 Hb_000429_200 Hb_000429_200 Hb_002067_040--Hb_000429_200 Hb_002067_040--Hb_012490_030 Hb_002078_200 Hb_002078_200 Hb_002289_100--Hb_002078_200 Hb_001178_070 Hb_001178_070 Hb_002289_100--Hb_001178_070 Hb_002972_020 Hb_002972_020 Hb_002289_100--Hb_002972_020 Hb_009486_180 Hb_009486_180 Hb_002289_100--Hb_009486_180 Hb_001232_010 Hb_001232_010 Hb_002289_100--Hb_001232_010 Hb_004223_090 Hb_004223_090 Hb_003159_080--Hb_004223_090 Hb_005539_030 Hb_005539_030 Hb_003159_080--Hb_005539_030 Hb_015292_030 Hb_015292_030 Hb_003159_080--Hb_015292_030 Hb_000003_160 Hb_000003_160 Hb_003159_080--Hb_000003_160 Hb_039946_020 Hb_039946_020 Hb_003159_080--Hb_039946_020 Hb_000169_010 Hb_000169_010 Hb_003159_080--Hb_000169_010 Hb_005608_020--Hb_006157_020 Hb_002205_040 Hb_002205_040 Hb_005608_020--Hb_002205_040 Hb_022693_120 Hb_022693_120 Hb_005608_020--Hb_022693_120 Hb_000084_120 Hb_000084_120 Hb_005608_020--Hb_000084_120 Hb_000029_130 Hb_000029_130 Hb_005608_020--Hb_000029_130 Hb_002890_020 Hb_002890_020 Hb_005608_020--Hb_002890_020 Hb_000748_080--Hb_006157_020 Hb_007017_090 Hb_007017_090 Hb_000748_080--Hb_007017_090 Hb_000086_380 Hb_000086_380 Hb_000748_080--Hb_000086_380 Hb_000748_080--Hb_012490_030 Hb_001579_320 Hb_001579_320 Hb_000748_080--Hb_001579_320 Hb_111198_020 Hb_111198_020 Hb_000748_080--Hb_111198_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69157 1.49512 1.02373 1.34948 3.93298 4.23794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.06851 3.89103 0.853407 3.74497 0.856701

CAGE analysis