Hb_007803_010

Information

Type -
Description -
Location Contig7803: 10575-15588
Sequence    

Annotation

kegg
ID tcc:TCM_031361
description F-box and associated interaction domains-containing protein, putative isoform 1
nr
ID XP_012070616.1
description PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067L480
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57940: 15517-15764
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007803_010 0.0 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
2 Hb_007747_060 0.0894989762 - - PREDICTED: mitochondrial fission protein ELM1 isoform X1 [Jatropha curcas]
3 Hb_003073_200 0.0990881394 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
4 Hb_000421_070 0.1006394402 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000008_330 0.1051065449 - - 60S ribosomal protein L12A [Hevea brasiliensis]
6 Hb_002081_130 0.1084677222 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_003464_110 0.1092239221 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
8 Hb_142439_010 0.1099202548 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
9 Hb_185679_010 0.1106990774 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
10 Hb_003752_080 0.1125018502 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
11 Hb_009620_040 0.1169207882 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
12 Hb_066182_010 0.1179608501 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
13 Hb_094022_010 0.1183950355 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
14 Hb_000236_370 0.1194203587 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
15 Hb_001486_340 0.1209332086 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
16 Hb_000645_150 0.1222375283 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000002_330 0.1226646095 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
18 Hb_000342_110 0.1230451882 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
19 Hb_005276_210 0.1236768758 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
20 Hb_017491_030 0.1242273061 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]

Gene co-expression network

sample Hb_007803_010 Hb_007803_010 Hb_007747_060 Hb_007747_060 Hb_007803_010--Hb_007747_060 Hb_003073_200 Hb_003073_200 Hb_007803_010--Hb_003073_200 Hb_000421_070 Hb_000421_070 Hb_007803_010--Hb_000421_070 Hb_000008_330 Hb_000008_330 Hb_007803_010--Hb_000008_330 Hb_002081_130 Hb_002081_130 Hb_007803_010--Hb_002081_130 Hb_003464_110 Hb_003464_110 Hb_007803_010--Hb_003464_110 Hb_000211_110 Hb_000211_110 Hb_007747_060--Hb_000211_110 Hb_003126_040 Hb_003126_040 Hb_007747_060--Hb_003126_040 Hb_001541_260 Hb_001541_260 Hb_007747_060--Hb_001541_260 Hb_003752_080 Hb_003752_080 Hb_007747_060--Hb_003752_080 Hb_000358_250 Hb_000358_250 Hb_007747_060--Hb_000358_250 Hb_000645_150 Hb_000645_150 Hb_003073_200--Hb_000645_150 Hb_000002_330 Hb_000002_330 Hb_003073_200--Hb_000002_330 Hb_000236_370 Hb_000236_370 Hb_003073_200--Hb_000236_370 Hb_000009_590 Hb_000009_590 Hb_003073_200--Hb_000009_590 Hb_000421_120 Hb_000421_120 Hb_003073_200--Hb_000421_120 Hb_002603_120 Hb_002603_120 Hb_000421_070--Hb_002603_120 Hb_005188_050 Hb_005188_050 Hb_000421_070--Hb_005188_050 Hb_000663_040 Hb_000663_040 Hb_000421_070--Hb_000663_040 Hb_001677_210 Hb_001677_210 Hb_000421_070--Hb_001677_210 Hb_004931_070 Hb_004931_070 Hb_000421_070--Hb_004931_070 Hb_004491_010 Hb_004491_010 Hb_000421_070--Hb_004491_010 Hb_142439_010 Hb_142439_010 Hb_000008_330--Hb_142439_010 Hb_004724_320 Hb_004724_320 Hb_000008_330--Hb_004724_320 Hb_001047_100 Hb_001047_100 Hb_000008_330--Hb_001047_100 Hb_000861_070 Hb_000861_070 Hb_000008_330--Hb_000861_070 Hb_075481_030 Hb_075481_030 Hb_000008_330--Hb_075481_030 Hb_105386_010 Hb_105386_010 Hb_000008_330--Hb_105386_010 Hb_002043_190 Hb_002043_190 Hb_002081_130--Hb_002043_190 Hb_066182_010 Hb_066182_010 Hb_002081_130--Hb_066182_010 Hb_000300_060 Hb_000300_060 Hb_002081_130--Hb_000300_060 Hb_003025_020 Hb_003025_020 Hb_002081_130--Hb_003025_020 Hb_005993_040 Hb_005993_040 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_055590_010 Hb_055590_010 Hb_003464_110--Hb_055590_010 Hb_000659_030 Hb_000659_030 Hb_003464_110--Hb_000659_030 Hb_000322_050 Hb_000322_050 Hb_003464_110--Hb_000322_050 Hb_008406_160 Hb_008406_160 Hb_003464_110--Hb_008406_160 Hb_003728_020 Hb_003728_020 Hb_003464_110--Hb_003728_020 Hb_001811_150 Hb_001811_150 Hb_003464_110--Hb_001811_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.30858 0.303115 0.19409 0.0974299 0.605353 0.494947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.377595 0.396165 0.161782 0.34277 0.0601273

CAGE analysis