Hb_055590_010

Information

Type -
Description -
Location Contig55590: 3851-7557
Sequence    

Annotation

kegg
ID rcu:RCOM_0085710
description hypothetical protein
nr
ID XP_002527875.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9Y2M2
description Protein SSUH2 homolog OS=Homo sapiens GN=SSUH2 PE=1 SV=1
trembl
ID B9SPF6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0085710 PE=4 SV=1
Gene Ontology
ID GO:0031072
description protein ssuh2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48496: 3853-7467
cDNA
(Sanger)
(ID:Location)		 021_M05.ab1: 5360-7438 , 027_E01.ab1: 5372-7438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055590_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003464_110 0.0381010926 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
3 Hb_000659_030 0.0778138257 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
4 Hb_000322_050 0.0830070919 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_003728_020 0.0860484862 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000160_170 0.0954587423 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
7 Hb_008406_160 0.0991854757 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
8 Hb_000012_090 0.1007285136 - - 3'-5' exonuclease, putative [Ricinus communis]
9 Hb_001811_150 0.1009860494 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
10 Hb_005539_030 0.1022090709 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
11 Hb_000429_200 0.1024348177 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
12 Hb_002081_130 0.1032470967 - - serine carboxypeptidase, putative [Ricinus communis]
13 Hb_000699_130 0.1038629836 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_570 0.1043314923 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
15 Hb_000169_010 0.1047710593 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
16 Hb_066182_010 0.104876656 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
17 Hb_060809_010 0.1051121909 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
18 Hb_005527_050 0.1056579499 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
19 Hb_003728_030 0.1056874848 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
20 Hb_000556_020 0.1061252605 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]

Gene co-expression network

sample Hb_055590_010 Hb_055590_010 Hb_003464_110 Hb_003464_110 Hb_055590_010--Hb_003464_110 Hb_000659_030 Hb_000659_030 Hb_055590_010--Hb_000659_030 Hb_000322_050 Hb_000322_050 Hb_055590_010--Hb_000322_050 Hb_003728_020 Hb_003728_020 Hb_055590_010--Hb_003728_020 Hb_000160_170 Hb_000160_170 Hb_055590_010--Hb_000160_170 Hb_008406_160 Hb_008406_160 Hb_055590_010--Hb_008406_160 Hb_003464_110--Hb_000659_030 Hb_003464_110--Hb_000322_050 Hb_003464_110--Hb_008406_160 Hb_003464_110--Hb_003728_020 Hb_001811_150 Hb_001811_150 Hb_003464_110--Hb_001811_150 Hb_005214_160 Hb_005214_160 Hb_000659_030--Hb_005214_160 Hb_000659_030--Hb_001811_150 Hb_000659_030--Hb_008406_160 Hb_000659_030--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_003728_020--Hb_000032_570 Hb_003728_020--Hb_000012_090 Hb_003728_020--Hb_001811_150 Hb_000189_620 Hb_000189_620 Hb_000160_170--Hb_000189_620 Hb_021443_070 Hb_021443_070 Hb_000160_170--Hb_021443_070 Hb_007426_230 Hb_007426_230 Hb_000160_170--Hb_007426_230 Hb_003878_190 Hb_003878_190 Hb_000160_170--Hb_003878_190 Hb_002097_110 Hb_002097_110 Hb_000160_170--Hb_002097_110 Hb_000015_080 Hb_000015_080 Hb_000160_170--Hb_000015_080 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_008406_160--Hb_000322_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.6685 36.7593 19.2107 21.7621 147.249 94.9874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
111.378 83.3717 55.5462 67.8076 24.9702

CAGE analysis