Hb_003464_110

Information

Type -
Description -
Location Contig3464: 86857-92451
Sequence    

Annotation

kegg
ID rcu:RCOM_0840970
description 3-deoxy-d-manno-octulosonic-acid transferase, putative
nr
ID XP_002528642.1
description 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
swissprot
ID Q8VZA5
description Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial OS=Arabidopsis thaliana GN=KDTA PE=2 SV=1
trembl
ID B9SRM3
description 3-deoxy-d-manno-octulosonic-acid transferase, putative OS=Ricinus communis GN=RCOM_0840970 PE=4 SV=1
Gene Ontology
ID GO:0016740
description probable 3-deoxy-d-manno-octulosonic acid mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36138: 88191-89065 , PASA_asmbl_36139: 90086-90946 , PASA_asmbl_36140: 91618-92434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_110 0.0 - - 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis]
2 Hb_055590_010 0.0381010926 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000659_030 0.0843147578 - - pollen Ole e 1 allergen and extensin family protein, partial [Manihot esculenta]
4 Hb_000322_050 0.089767611 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
5 Hb_008406_160 0.0969849953 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]
6 Hb_003728_020 0.099361698 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001811_150 0.0994625313 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
8 Hb_000012_090 0.1049449403 - - 3'-5' exonuclease, putative [Ricinus communis]
9 Hb_002081_130 0.1053603136 - - serine carboxypeptidase, putative [Ricinus communis]
10 Hb_000699_130 0.1059073061 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005539_030 0.1060896955 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
12 Hb_003728_030 0.1078859979 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
13 Hb_000556_020 0.1084184375 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
14 Hb_000002_330 0.1086552398 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
15 Hb_005527_050 0.1089595279 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
16 Hb_007803_010 0.1092239221 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
17 Hb_060809_010 0.1095872632 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
18 Hb_000169_010 0.1099053993 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
19 Hb_082609_020 0.1107898826 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000522_090 0.1116824241 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003464_110 Hb_003464_110 Hb_055590_010 Hb_055590_010 Hb_003464_110--Hb_055590_010 Hb_000659_030 Hb_000659_030 Hb_003464_110--Hb_000659_030 Hb_000322_050 Hb_000322_050 Hb_003464_110--Hb_000322_050 Hb_008406_160 Hb_008406_160 Hb_003464_110--Hb_008406_160 Hb_003728_020 Hb_003728_020 Hb_003464_110--Hb_003728_020 Hb_001811_150 Hb_001811_150 Hb_003464_110--Hb_001811_150 Hb_055590_010--Hb_000659_030 Hb_055590_010--Hb_000322_050 Hb_055590_010--Hb_003728_020 Hb_000160_170 Hb_000160_170 Hb_055590_010--Hb_000160_170 Hb_055590_010--Hb_008406_160 Hb_005214_160 Hb_005214_160 Hb_000659_030--Hb_005214_160 Hb_000659_030--Hb_001811_150 Hb_000659_030--Hb_008406_160 Hb_000659_030--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000322_050--Hb_003453_020 Hb_000012_090 Hb_000012_090 Hb_000322_050--Hb_000012_090 Hb_028639_060 Hb_028639_060 Hb_000322_050--Hb_028639_060 Hb_000322_050--Hb_003728_020 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000032_570 Hb_000032_570 Hb_000322_050--Hb_000032_570 Hb_000258_410 Hb_000258_410 Hb_008406_160--Hb_000258_410 Hb_000808_040 Hb_000808_040 Hb_008406_160--Hb_000808_040 Hb_000997_060 Hb_000997_060 Hb_008406_160--Hb_000997_060 Hb_008406_160--Hb_003453_020 Hb_015941_030 Hb_015941_030 Hb_008406_160--Hb_015941_030 Hb_008406_160--Hb_000322_050 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_003728_020--Hb_000032_570 Hb_003728_020--Hb_000012_090 Hb_003728_020--Hb_001811_150 Hb_003728_030 Hb_003728_030 Hb_001811_150--Hb_003728_030 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.67215 2.18506 1.17728 0.938923 7.74041 5.31952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.90532 4.23955 2.86521 3.32485 0.968807

CAGE analysis