Hb_000160_170

Information

Type -
Description -
Location Contig160: 150930-154337
Sequence    

Annotation

kegg
ID rcu:RCOM_0326980
description ubiquitin-protein ligase, putative
nr
ID KDP22664.1
description hypothetical protein JCGZ_02506 [Jatropha curcas]
swissprot
ID Q84K34
description E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1
trembl
ID A0A067JT13
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_02506 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sina-like 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14320: 151250-154298
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_170 0.0 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
2 Hb_000189_620 0.082580011 - - hypothetical protein JCGZ_23450 [Jatropha curcas]
3 Hb_021443_070 0.0839047028 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
4 Hb_007426_230 0.0854097815 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]
5 Hb_003878_190 0.0876504318 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
6 Hb_002097_110 0.0895679681 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_000015_080 0.0901536046 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
8 Hb_007508_070 0.0907822269 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
9 Hb_003728_020 0.0913920121 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001545_140 0.0927656474 transcription factor TF Family: NAC -
11 Hb_000977_080 0.0942111137 - - type II inositol 5-phosphatase, putative [Ricinus communis]
12 Hb_060809_010 0.0943895082 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
13 Hb_000928_240 0.0951346077 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
14 Hb_055590_010 0.0954587423 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004440_090 0.0960143301 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
16 Hb_003976_010 0.0963884753 - - methionine aminopeptidase, putative [Ricinus communis]
17 Hb_003540_040 0.0965669858 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
18 Hb_002928_130 0.0970469656 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
19 Hb_000154_080 0.0974390632 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
20 Hb_000599_110 0.0983827756 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000160_170 Hb_000160_170 Hb_000189_620 Hb_000189_620 Hb_000160_170--Hb_000189_620 Hb_021443_070 Hb_021443_070 Hb_000160_170--Hb_021443_070 Hb_007426_230 Hb_007426_230 Hb_000160_170--Hb_007426_230 Hb_003878_190 Hb_003878_190 Hb_000160_170--Hb_003878_190 Hb_002097_110 Hb_002097_110 Hb_000160_170--Hb_002097_110 Hb_000015_080 Hb_000015_080 Hb_000160_170--Hb_000015_080 Hb_000189_620--Hb_007426_230 Hb_000123_260 Hb_000123_260 Hb_000189_620--Hb_000123_260 Hb_002006_020 Hb_002006_020 Hb_000189_620--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_000189_620--Hb_001477_110 Hb_002311_350 Hb_002311_350 Hb_000189_620--Hb_002311_350 Hb_004440_090 Hb_004440_090 Hb_021443_070--Hb_004440_090 Hb_021443_070--Hb_000015_080 Hb_012340_080 Hb_012340_080 Hb_021443_070--Hb_012340_080 Hb_000046_280 Hb_000046_280 Hb_021443_070--Hb_000046_280 Hb_004735_040 Hb_004735_040 Hb_021443_070--Hb_004735_040 Hb_004195_160 Hb_004195_160 Hb_007426_230--Hb_004195_160 Hb_007426_230--Hb_002097_110 Hb_007426_230--Hb_004440_090 Hb_001030_120 Hb_001030_120 Hb_007426_230--Hb_001030_120 Hb_015001_020 Hb_015001_020 Hb_007426_230--Hb_015001_020 Hb_000398_180 Hb_000398_180 Hb_007426_230--Hb_000398_180 Hb_003001_060 Hb_003001_060 Hb_003878_190--Hb_003001_060 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_002097_110--Hb_015001_020 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_002097_110--Hb_001824_070 Hb_002928_130 Hb_002928_130 Hb_000015_080--Hb_002928_130 Hb_011360_140 Hb_011360_140 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000392_440 Hb_000392_440 Hb_000015_080--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_000015_080--Hb_005993_040 Hb_000015_080--Hb_000392_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1057 7.94837 5.3241 5.71721 36.2301 21.4918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0187 33.4827 20.8536 12.6311 8.67275

CAGE analysis