Hb_021443_070

Information

Type -
Description -
Location Contig21443: 46613-51092
Sequence    

Annotation

kegg
ID rcu:RCOM_1498650
description rar1, putative
nr
ID XP_012090376.1
description PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
swissprot
ID Q9SE33
description Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1
trembl
ID B9R9M1
description Rar1, putative OS=Ricinus communis GN=RCOM_1498650 PE=4 SV=1
Gene Ontology
ID GO:0008270
description cysteine and histidine-rich domain-containing protein rar1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22150: 46551-50099 , PASA_asmbl_22153: 50517-50955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021443_070 0.0 - - PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 isoform X1 [Jatropha curcas]
2 Hb_004440_090 0.0805089861 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
3 Hb_000160_170 0.0839047028 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
4 Hb_000015_080 0.0869404345 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
5 Hb_012340_080 0.0878157987 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
6 Hb_000046_280 0.0884083679 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
7 Hb_004735_040 0.0892034484 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
8 Hb_000302_010 0.0906591999 - - Vesicle-associated membrane protein, putative [Ricinus communis]
9 Hb_002928_130 0.0908318928 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
10 Hb_132835_010 0.0939368725 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
11 Hb_001629_110 0.0955513977 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
12 Hb_001489_060 0.0959225488 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
13 Hb_001502_070 0.0974738697 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
14 Hb_002006_020 0.0980639185 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
15 Hb_063716_050 0.0996431514 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
16 Hb_007576_040 0.1008984344 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
17 Hb_001379_060 0.1010619733 - - PREDICTED: uncharacterized protein LOC105650815 isoform X1 [Jatropha curcas]
18 Hb_000454_050 0.1018956018 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
19 Hb_004994_100 0.1032561486 - - acyl-CoA thioesterase, putative [Ricinus communis]
20 Hb_000264_240 0.104473872 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021443_070 Hb_021443_070 Hb_004440_090 Hb_004440_090 Hb_021443_070--Hb_004440_090 Hb_000160_170 Hb_000160_170 Hb_021443_070--Hb_000160_170 Hb_000015_080 Hb_000015_080 Hb_021443_070--Hb_000015_080 Hb_012340_080 Hb_012340_080 Hb_021443_070--Hb_012340_080 Hb_000046_280 Hb_000046_280 Hb_021443_070--Hb_000046_280 Hb_004735_040 Hb_004735_040 Hb_021443_070--Hb_004735_040 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_004440_090--Hb_000046_280 Hb_000398_180 Hb_000398_180 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_000189_620 Hb_000189_620 Hb_000160_170--Hb_000189_620 Hb_000160_170--Hb_007426_230 Hb_003878_190 Hb_003878_190 Hb_000160_170--Hb_003878_190 Hb_002097_110 Hb_002097_110 Hb_000160_170--Hb_002097_110 Hb_000160_170--Hb_000015_080 Hb_002928_130 Hb_002928_130 Hb_000015_080--Hb_002928_130 Hb_011360_140 Hb_011360_140 Hb_000015_080--Hb_011360_140 Hb_003540_040 Hb_003540_040 Hb_000015_080--Hb_003540_040 Hb_000392_440 Hb_000392_440 Hb_000015_080--Hb_000392_440 Hb_005993_040 Hb_005993_040 Hb_000015_080--Hb_005993_040 Hb_000392_270 Hb_000392_270 Hb_000015_080--Hb_000392_270 Hb_001564_130 Hb_001564_130 Hb_012340_080--Hb_001564_130 Hb_010368_020 Hb_010368_020 Hb_012340_080--Hb_010368_020 Hb_001379_060 Hb_001379_060 Hb_012340_080--Hb_001379_060 Hb_000661_250 Hb_000661_250 Hb_012340_080--Hb_000661_250 Hb_000302_010 Hb_000302_010 Hb_012340_080--Hb_000302_010 Hb_012725_050 Hb_012725_050 Hb_000046_280--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000046_280--Hb_002214_040 Hb_007576_040 Hb_007576_040 Hb_000046_280--Hb_007576_040 Hb_001703_030 Hb_001703_030 Hb_000046_280--Hb_001703_030 Hb_000046_280--Hb_000392_440 Hb_002609_020 Hb_002609_020 Hb_004735_040--Hb_002609_020 Hb_001821_010 Hb_001821_010 Hb_004735_040--Hb_001821_010 Hb_001105_030 Hb_001105_030 Hb_004735_040--Hb_001105_030 Hb_001489_060 Hb_001489_060 Hb_004735_040--Hb_001489_060 Hb_001195_280 Hb_001195_280 Hb_004735_040--Hb_001195_280 Hb_004735_040--Hb_000302_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5035 8.05924 11.9112 9.14384 39.6997 20.6688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7181 32.5693 21.6727 9.95803 8.6818

CAGE analysis