Hb_003073_200

Information

Type -
Description -
Location Contig3073: 154523-186537
Sequence    

Annotation

kegg
ID pmum:103324696
description uncharacterized LOC103324696
nr
ID XP_012092397.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
swissprot
ID Q9SXB3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11280 OS=Arabidopsis thaliana GN=At1g11280 PE=2 SV=1
trembl
ID A0A0E0GKI3
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0004713
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32461: 154562-155095 , PASA_asmbl_32462: 156304-157090 , PASA_asmbl_32464: 185811-186369
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003073_200 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Jatropha curcas]
2 Hb_000645_150 0.097411491 - - zinc finger protein, putative [Ricinus communis]
3 Hb_007803_010 0.0990881394 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
4 Hb_000002_330 0.1077261842 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_000236_370 0.1085617504 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1 [Jatropha curcas]
6 Hb_000009_590 0.1085649709 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
7 Hb_000421_120 0.1093553506 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
8 Hb_009620_040 0.1100740942 - - PREDICTED: cyclin-T1-3-like [Jatropha curcas]
9 Hb_000342_110 0.1105420652 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
10 Hb_001140_250 0.1109735497 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
11 Hb_012634_010 0.11155536 - - PREDICTED: uncharacterized protein LOC105110292 [Populus euphratica]
12 Hb_000421_070 0.1116555796 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_000244_300 0.1133980906 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
14 Hb_185679_010 0.1139461237 - - serine/threonine-protein kinase rio2, putative [Ricinus communis]
15 Hb_000224_060 0.1141919936 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
16 Hb_006816_500 0.1143691211 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
17 Hb_000059_210 0.1149410395 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003752_080 0.1155573916 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
19 Hb_001975_070 0.1160482521 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
20 Hb_000008_330 0.1161598815 - - 60S ribosomal protein L12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_003073_200 Hb_003073_200 Hb_000645_150 Hb_000645_150 Hb_003073_200--Hb_000645_150 Hb_007803_010 Hb_007803_010 Hb_003073_200--Hb_007803_010 Hb_000002_330 Hb_000002_330 Hb_003073_200--Hb_000002_330 Hb_000236_370 Hb_000236_370 Hb_003073_200--Hb_000236_370 Hb_000009_590 Hb_000009_590 Hb_003073_200--Hb_000009_590 Hb_000421_120 Hb_000421_120 Hb_003073_200--Hb_000421_120 Hb_000645_150--Hb_000236_370 Hb_002097_090 Hb_002097_090 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_007747_060 Hb_007747_060 Hb_007803_010--Hb_007747_060 Hb_000421_070 Hb_000421_070 Hb_007803_010--Hb_000421_070 Hb_000008_330 Hb_000008_330 Hb_007803_010--Hb_000008_330 Hb_002081_130 Hb_002081_130 Hb_007803_010--Hb_002081_130 Hb_003464_110 Hb_003464_110 Hb_007803_010--Hb_003464_110 Hb_000236_320 Hb_000236_320 Hb_000002_330--Hb_000236_320 Hb_006816_500 Hb_006816_500 Hb_000002_330--Hb_006816_500 Hb_000322_050 Hb_000322_050 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000002_330--Hb_000645_150 Hb_000236_370--Hb_002097_090 Hb_028639_060 Hb_028639_060 Hb_000236_370--Hb_028639_060 Hb_000236_370--Hb_012305_070 Hb_000956_030 Hb_000956_030 Hb_000236_370--Hb_000956_030 Hb_000236_370--Hb_000186_280 Hb_000041_220 Hb_000041_220 Hb_000009_590--Hb_000041_220 Hb_006816_320 Hb_006816_320 Hb_000009_590--Hb_006816_320 Hb_000236_300 Hb_000236_300 Hb_000009_590--Hb_000236_300 Hb_002505_040 Hb_002505_040 Hb_000009_590--Hb_002505_040 Hb_000398_190 Hb_000398_190 Hb_000009_590--Hb_000398_190 Hb_000224_060 Hb_000224_060 Hb_000421_120--Hb_000224_060 Hb_002813_010 Hb_002813_010 Hb_000421_120--Hb_002813_010 Hb_000046_010 Hb_000046_010 Hb_000421_120--Hb_000046_010 Hb_000865_080 Hb_000865_080 Hb_000421_120--Hb_000865_080 Hb_076693_020 Hb_076693_020 Hb_000421_120--Hb_076693_020 Hb_001168_040 Hb_001168_040 Hb_000421_120--Hb_001168_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.816229 0.539302 0.187564 0.17837 0.893496 0.806092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439493 0.661388 0.27924 0.53925 0.082043

CAGE analysis