Hb_000115_310

Information

Type -
Description -
Location Contig115: 343756-344400
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13230g
description POPTRDRAFT_566598; zinc finger family protein
nr
ID XP_012082123.1
description PREDICTED: zinc finger protein 6 [Jatropha curcas]
swissprot
ID Q39265
description Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1
trembl
ID A0A067JZN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18362 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_310 0.0 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
2 Hb_039894_010 0.1160118748 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001140_250 0.1162945083 - - KDEL motif-containing protein 1 precursor, putative [Ricinus communis]
4 Hb_004586_180 0.1254026355 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
5 Hb_003747_010 0.1309123587 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
6 Hb_005122_080 0.131466227 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
7 Hb_000029_160 0.135748768 - - Nitrilase, putative [Ricinus communis]
8 Hb_176152_010 0.1371082218 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
9 Hb_027405_020 0.1376819786 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
10 Hb_001976_090 0.140601902 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
11 Hb_000347_280 0.140718589 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
12 Hb_012753_020 0.1420675118 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000984_050 0.1435633253 - - sucrose transporter 5 [Hevea brasiliensis]
14 Hb_000310_080 0.1440184014 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
15 Hb_002675_060 0.1470910492 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
16 Hb_003020_110 0.1479779652 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_000078_100 0.1485983716 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
18 Hb_002960_060 0.1489966463 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
19 Hb_000879_140 0.1499385028 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
20 Hb_000376_090 0.150457815 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]

Gene co-expression network

sample Hb_000115_310 Hb_000115_310 Hb_039894_010 Hb_039894_010 Hb_000115_310--Hb_039894_010 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_015763_020 Hb_015763_020 Hb_039894_010--Hb_015763_020 Hb_000445_300 Hb_000445_300 Hb_039894_010--Hb_000445_300 Hb_001009_290 Hb_001009_290 Hb_039894_010--Hb_001009_290 Hb_004136_040 Hb_004136_040 Hb_039894_010--Hb_004136_040 Hb_004920_130 Hb_004920_130 Hb_039894_010--Hb_004920_130 Hb_007101_170 Hb_007101_170 Hb_001140_250--Hb_007101_170 Hb_002701_080 Hb_002701_080 Hb_001140_250--Hb_002701_080 Hb_002400_310 Hb_002400_310 Hb_001140_250--Hb_002400_310 Hb_000244_220 Hb_000244_220 Hb_001140_250--Hb_000244_220 Hb_000059_210 Hb_000059_210 Hb_001140_250--Hb_000059_210 Hb_001152_030 Hb_001152_030 Hb_001140_250--Hb_001152_030 Hb_164010_060 Hb_164010_060 Hb_004586_180--Hb_164010_060 Hb_004108_140 Hb_004108_140 Hb_004586_180--Hb_004108_140 Hb_004586_180--Hb_003747_010 Hb_026099_010 Hb_026099_010 Hb_004586_180--Hb_026099_010 Hb_106371_010 Hb_106371_010 Hb_004586_180--Hb_106371_010 Hb_185679_010 Hb_185679_010 Hb_004586_180--Hb_185679_010 Hb_030116_020 Hb_030116_020 Hb_003747_010--Hb_030116_020 Hb_080313_010 Hb_080313_010 Hb_003747_010--Hb_080313_010 Hb_002163_010 Hb_002163_010 Hb_003747_010--Hb_002163_010 Hb_001172_010 Hb_001172_010 Hb_003747_010--Hb_001172_010 Hb_006586_050 Hb_006586_050 Hb_003747_010--Hb_006586_050 Hb_029142_010 Hb_029142_010 Hb_005122_080--Hb_029142_010 Hb_005122_080--Hb_002163_010 Hb_001633_040 Hb_001633_040 Hb_005122_080--Hb_001633_040 Hb_010080_060 Hb_010080_060 Hb_005122_080--Hb_010080_060 Hb_031042_070 Hb_031042_070 Hb_005122_080--Hb_031042_070 Hb_005494_020 Hb_005494_020 Hb_005122_080--Hb_005494_020 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000172_550 Hb_000172_550 Hb_000029_160--Hb_000172_550 Hb_001975_070 Hb_001975_070 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.3198 9.51756 1.46226 6.05756 20.8065 15.4046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.8104 6.85442 4.2887 17.2067 2.65414

CAGE analysis