Hb_002890_210

Information

Type -
Description -
Location Contig2890: 312190-313488
Sequence    

Annotation

kegg
ID tcc:TCM_014579
description 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative
nr
ID XP_012069277.1
description PREDICTED: vinorine synthase-like [Jatropha curcas]
swissprot
ID Q70PR7
description Vinorine synthase OS=Rauvolfia serpentina GN=ACT PE=1 SV=2
trembl
ID A0A067L9V4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24898 PE=4 SV=1
Gene Ontology
ID GO:0016747
description 3 -n-debenzoyl-2 -deoxytaxol n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30216: 312604-312918 , PASA_asmbl_30217: 313087-313398
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_210 0.0 - - PREDICTED: vinorine synthase-like [Jatropha curcas]
2 Hb_001902_070 0.1582941597 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003120_030 0.1642162253 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
4 Hb_000002_330 0.1643264072 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
5 Hb_000500_280 0.1651943507 - - Brassinosteroid-regulated protein BRU1 precursor, putative [Ricinus communis]
6 Hb_054301_010 0.1653476372 - - hypothetical protein EUTSA_v10006737mg [Eutrema salsugineum]
7 Hb_186982_030 0.1699656586 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005288_160 0.1783619121 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
9 Hb_055590_010 0.1824634255 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006816_500 0.1838539835 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1 [Jatropha curcas]
11 Hb_003025_020 0.1844860904 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_010810_050 0.1862549956 - - hypothetical protein [Cleome spinosa]
13 Hb_001184_100 0.1870958672 - - PREDICTED: zinc finger protein 4-like [Populus euphratica]
14 Hb_000322_050 0.1874312571 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
15 Hb_150069_020 0.1887916143 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
16 Hb_001329_220 0.1906980279 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003976_010 0.1908438961 - - methionine aminopeptidase, putative [Ricinus communis]
18 Hb_143629_010 0.192552657 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_128548_020 0.1929063952 - - PREDICTED: transmembrane protein 56-like [Jatropha curcas]
20 Hb_002276_190 0.1937851537 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]

Gene co-expression network

sample Hb_002890_210 Hb_002890_210 Hb_001902_070 Hb_001902_070 Hb_002890_210--Hb_001902_070 Hb_003120_030 Hb_003120_030 Hb_002890_210--Hb_003120_030 Hb_000002_330 Hb_000002_330 Hb_002890_210--Hb_000002_330 Hb_000500_280 Hb_000500_280 Hb_002890_210--Hb_000500_280 Hb_054301_010 Hb_054301_010 Hb_002890_210--Hb_054301_010 Hb_186982_030 Hb_186982_030 Hb_002890_210--Hb_186982_030 Hb_001902_070--Hb_186982_030 Hb_000395_140 Hb_000395_140 Hb_001902_070--Hb_000395_140 Hb_054380_010 Hb_054380_010 Hb_001902_070--Hb_054380_010 Hb_001278_070 Hb_001278_070 Hb_001902_070--Hb_001278_070 Hb_002284_300 Hb_002284_300 Hb_001902_070--Hb_002284_300 Hb_001329_220 Hb_001329_220 Hb_003120_030--Hb_001329_220 Hb_000500_090 Hb_000500_090 Hb_003120_030--Hb_000500_090 Hb_002333_080 Hb_002333_080 Hb_003120_030--Hb_002333_080 Hb_003159_080 Hb_003159_080 Hb_003120_030--Hb_003159_080 Hb_003976_010 Hb_003976_010 Hb_003120_030--Hb_003976_010 Hb_004048_070 Hb_004048_070 Hb_003120_030--Hb_004048_070 Hb_000236_320 Hb_000236_320 Hb_000002_330--Hb_000236_320 Hb_006816_500 Hb_006816_500 Hb_000002_330--Hb_006816_500 Hb_000322_050 Hb_000322_050 Hb_000002_330--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_000002_330--Hb_003453_020 Hb_004096_170 Hb_004096_170 Hb_000002_330--Hb_004096_170 Hb_000645_150 Hb_000645_150 Hb_000002_330--Hb_000645_150 Hb_134226_010 Hb_134226_010 Hb_000500_280--Hb_134226_010 Hb_004204_030 Hb_004204_030 Hb_000500_280--Hb_004204_030 Hb_017895_050 Hb_017895_050 Hb_000500_280--Hb_017895_050 Hb_000866_300 Hb_000866_300 Hb_000500_280--Hb_000866_300 Hb_000500_280--Hb_054301_010 Hb_000035_380 Hb_000035_380 Hb_000500_280--Hb_000035_380 Hb_001035_030 Hb_001035_030 Hb_054301_010--Hb_001035_030 Hb_054301_010--Hb_004204_030 Hb_054301_010--Hb_000866_300 Hb_001804_040 Hb_001804_040 Hb_054301_010--Hb_001804_040 Hb_001951_110 Hb_001951_110 Hb_054301_010--Hb_001951_110 Hb_003001_060 Hb_003001_060 Hb_054301_010--Hb_003001_060 Hb_005063_010 Hb_005063_010 Hb_186982_030--Hb_005063_010 Hb_000958_010 Hb_000958_010 Hb_186982_030--Hb_000958_010 Hb_000101_170 Hb_000101_170 Hb_186982_030--Hb_000101_170 Hb_002200_110 Hb_002200_110 Hb_186982_030--Hb_002200_110 Hb_004032_240 Hb_004032_240 Hb_186982_030--Hb_004032_240 Hb_001911_030 Hb_001911_030 Hb_186982_030--Hb_001911_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.5702 0.37334 0.470598 0.686098 5.64913 2.27594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3263 3.63097 1.73585 3.74164 0.241477

CAGE analysis