Hb_001278_070

Information

Type -
Description -
Location Contig1278: 92476-103227
Sequence    

Annotation

kegg
ID rcu:RCOM_0576870
description catalytic, putative
nr
ID KHN42427.1
description hypothetical protein glysoja_020139 [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2SDR4
description Uncharacterized protein OS=Glycine soja GN=glysoja_020139 PE=4 SV=1
Gene Ontology
ID GO:0004252
description hypothetical protein glysoja_020139

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08551: 93601-103056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001278_070 0.0 - - hypothetical protein glysoja_020139 [Glycine soja]
2 Hb_000384_030 0.1439674941 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
3 Hb_111198_020 0.14853612 - - hypothetical protein JCGZ_06907 [Jatropha curcas]
4 Hb_001089_020 0.1524830173 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
5 Hb_007904_220 0.1528051344 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
6 Hb_001541_080 0.1555443842 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002217_150 0.1566608048 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
8 Hb_007943_130 0.1594042967 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
9 Hb_001221_040 0.1601904032 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
10 Hb_011218_080 0.160707242 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
11 Hb_000071_180 0.1664090627 - - PREDICTED: putative DEAD-box ATP-dependent RNA helicase 29 isoform X1 [Jatropha curcas]
12 Hb_000343_030 0.1667537165 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
13 Hb_000984_050 0.1701658316 - - sucrose transporter 5 [Hevea brasiliensis]
14 Hb_002067_040 0.1704033162 - - dihydrodipicolinate reductase, putative [Ricinus communis]
15 Hb_001143_110 0.1704796262 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
16 Hb_002028_170 0.1723828442 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
17 Hb_052764_090 0.1729262744 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000181_250 0.1754630821 - - PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [Jatropha curcas]
19 Hb_106371_010 0.1755141399 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_000033_030 0.1763879318 - - PREDICTED: ankyrin repeat protein SKIP35 [Jatropha curcas]

Gene co-expression network

sample Hb_001278_070 Hb_001278_070 Hb_000384_030 Hb_000384_030 Hb_001278_070--Hb_000384_030 Hb_111198_020 Hb_111198_020 Hb_001278_070--Hb_111198_020 Hb_001089_020 Hb_001089_020 Hb_001278_070--Hb_001089_020 Hb_007904_220 Hb_007904_220 Hb_001278_070--Hb_007904_220 Hb_001541_080 Hb_001541_080 Hb_001278_070--Hb_001541_080 Hb_002217_150 Hb_002217_150 Hb_001278_070--Hb_002217_150 Hb_001247_200 Hb_001247_200 Hb_000384_030--Hb_001247_200 Hb_058643_010 Hb_058643_010 Hb_000384_030--Hb_058643_010 Hb_000384_030--Hb_002217_150 Hb_006816_170 Hb_006816_170 Hb_000384_030--Hb_006816_170 Hb_009898_020 Hb_009898_020 Hb_000384_030--Hb_009898_020 Hb_000748_080 Hb_000748_080 Hb_111198_020--Hb_000748_080 Hb_004108_140 Hb_004108_140 Hb_111198_020--Hb_004108_140 Hb_011512_090 Hb_011512_090 Hb_111198_020--Hb_011512_090 Hb_089497_010 Hb_089497_010 Hb_111198_020--Hb_089497_010 Hb_002400_400 Hb_002400_400 Hb_111198_020--Hb_002400_400 Hb_111198_020--Hb_001089_020 Hb_000010_250 Hb_000010_250 Hb_001089_020--Hb_000010_250 Hb_004453_040 Hb_004453_040 Hb_001089_020--Hb_004453_040 Hb_005271_190 Hb_005271_190 Hb_001089_020--Hb_005271_190 Hb_002918_060 Hb_002918_060 Hb_001089_020--Hb_002918_060 Hb_001089_020--Hb_011512_090 Hb_005205_020 Hb_005205_020 Hb_007904_220--Hb_005205_020 Hb_025012_010 Hb_025012_010 Hb_007904_220--Hb_025012_010 Hb_001221_040 Hb_001221_040 Hb_007904_220--Hb_001221_040 Hb_002067_150 Hb_002067_150 Hb_007904_220--Hb_002067_150 Hb_000436_040 Hb_000436_040 Hb_007904_220--Hb_000436_040 Hb_002028_170 Hb_002028_170 Hb_007904_220--Hb_002028_170 Hb_001143_110 Hb_001143_110 Hb_001541_080--Hb_001143_110 Hb_000300_440 Hb_000300_440 Hb_001541_080--Hb_000300_440 Hb_003464_020 Hb_003464_020 Hb_001541_080--Hb_003464_020 Hb_000317_250 Hb_000317_250 Hb_001541_080--Hb_000317_250 Hb_001541_080--Hb_001221_040 Hb_001675_070 Hb_001675_070 Hb_001541_080--Hb_001675_070 Hb_003236_010 Hb_003236_010 Hb_002217_150--Hb_003236_010 Hb_007849_020 Hb_007849_020 Hb_002217_150--Hb_007849_020 Hb_002471_210 Hb_002471_210 Hb_002217_150--Hb_002471_210 Hb_001433_190 Hb_001433_190 Hb_002217_150--Hb_001433_190 Hb_002291_070 Hb_002291_070 Hb_002217_150--Hb_002291_070 Hb_000227_380 Hb_000227_380 Hb_002217_150--Hb_000227_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78358 1.1654 0.457264 0.504135 5.10678 3.77741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.63695 1.28881 1.21165 5.29241 1.45615

CAGE analysis