Hb_009898_020

Information

Type -
Description -
Location Contig9898: 15704-22151
Sequence    

Annotation

kegg
ID vvi:100265032
description RNA pseudouridine synthase 5
nr
ID KDP25730.1
description hypothetical protein JCGZ_23951 [Jatropha curcas]
swissprot
ID Q5M721
description RNA pseudouridine synthase 5 OS=Arabidopsis thaliana GN=At3g52260 PE=2 SV=2
trembl
ID A0A067K0H9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23951 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64705: 16184-16567 , PASA_asmbl_64706: 21369-22143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009898_020 0.0 - - hypothetical protein JCGZ_23951 [Jatropha curcas]
2 Hb_077562_030 0.1621182273 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
3 Hb_015026_110 0.1703635068 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
4 Hb_000130_040 0.1743779837 - - PREDICTED: dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
5 Hb_000384_030 0.1772225274 - - PREDICTED: uncharacterized protein LOC101310565 isoform X1 [Fragaria vesca subsp. vesca]
6 Hb_001117_170 0.1775499076 - - -
7 Hb_010021_010 0.1779545534 - - unnamed protein product [Coffea canephora]
8 Hb_011928_020 0.18346556 - - something about silencing protein sas10, putative [Ricinus communis]
9 Hb_002289_100 0.1881017018 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 [Jatropha curcas]
10 Hb_000106_120 0.1898214399 - - hypothetical protein glysoja_007050 [Glycine soja]
11 Hb_000136_040 0.1926180321 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
12 Hb_000111_420 0.1926453334 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
13 Hb_003498_130 0.1963798837 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
14 Hb_001529_040 0.1966252238 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
15 Hb_002078_200 0.1969275525 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
16 Hb_000684_290 0.1983328695 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
17 Hb_002972_020 0.1986857862 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
18 Hb_000009_570 0.1992095867 - - PREDICTED: cytochrome P450 CYP82D47-like [Populus euphratica]
19 Hb_000631_070 0.2018267535 transcription factor TF Family: C2H2 PREDICTED: histone deacetylase 5 [Jatropha curcas]
20 Hb_004800_200 0.2022438728 - - -

Gene co-expression network

sample Hb_009898_020 Hb_009898_020 Hb_077562_030 Hb_077562_030 Hb_009898_020--Hb_077562_030 Hb_015026_110 Hb_015026_110 Hb_009898_020--Hb_015026_110 Hb_000130_040 Hb_000130_040 Hb_009898_020--Hb_000130_040 Hb_000384_030 Hb_000384_030 Hb_009898_020--Hb_000384_030 Hb_001117_170 Hb_001117_170 Hb_009898_020--Hb_001117_170 Hb_010021_010 Hb_010021_010 Hb_009898_020--Hb_010021_010 Hb_008147_070 Hb_008147_070 Hb_077562_030--Hb_008147_070 Hb_172632_110 Hb_172632_110 Hb_077562_030--Hb_172632_110 Hb_001761_130 Hb_001761_130 Hb_077562_030--Hb_001761_130 Hb_002477_090 Hb_002477_090 Hb_077562_030--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_077562_030--Hb_001232_010 Hb_000684_290 Hb_000684_290 Hb_077562_030--Hb_000684_290 Hb_005048_100 Hb_005048_100 Hb_015026_110--Hb_005048_100 Hb_015026_110--Hb_010021_010 Hb_015026_110--Hb_001232_010 Hb_000900_030 Hb_000900_030 Hb_015026_110--Hb_000900_030 Hb_001529_040 Hb_001529_040 Hb_015026_110--Hb_001529_040 Hb_015026_110--Hb_002477_090 Hb_002701_040 Hb_002701_040 Hb_000130_040--Hb_002701_040 Hb_006831_040 Hb_006831_040 Hb_000130_040--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_000130_040--Hb_010174_110 Hb_004032_380 Hb_004032_380 Hb_000130_040--Hb_004032_380 Hb_002740_110 Hb_002740_110 Hb_000130_040--Hb_002740_110 Hb_002053_080 Hb_002053_080 Hb_000130_040--Hb_002053_080 Hb_001247_200 Hb_001247_200 Hb_000384_030--Hb_001247_200 Hb_001278_070 Hb_001278_070 Hb_000384_030--Hb_001278_070 Hb_058643_010 Hb_058643_010 Hb_000384_030--Hb_058643_010 Hb_002217_150 Hb_002217_150 Hb_000384_030--Hb_002217_150 Hb_006816_170 Hb_006816_170 Hb_000384_030--Hb_006816_170 Hb_009270_010 Hb_009270_010 Hb_001117_170--Hb_009270_010 Hb_188126_010 Hb_188126_010 Hb_001117_170--Hb_188126_010 Hb_000005_190 Hb_000005_190 Hb_001117_170--Hb_000005_190 Hb_000398_120 Hb_000398_120 Hb_001117_170--Hb_000398_120 Hb_007805_010 Hb_007805_010 Hb_001117_170--Hb_007805_010 Hb_011928_020 Hb_011928_020 Hb_001117_170--Hb_011928_020 Hb_000106_120 Hb_000106_120 Hb_010021_010--Hb_000106_120 Hb_002005_080 Hb_002005_080 Hb_010021_010--Hb_002005_080 Hb_010021_010--Hb_001232_010 Hb_010021_010--Hb_002477_090 Hb_010021_010--Hb_005048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.056699 0.150977 0.0431575 0.0763538 0.439924 0.3408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172791 0.237851 0.189105 0.626761 0.280435

CAGE analysis