Hb_010021_010

Information

Type -
Description -
Location Contig10021: 22499-26573
Sequence    

Annotation

kegg
ID csv:101232703
description pre-mRNA-processing protein 40A-like
nr
ID CDP01014.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID F6H176
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g08670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00253: 25450-25576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010021_010 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_000106_120 0.0962982052 - - hypothetical protein glysoja_007050 [Glycine soja]
3 Hb_002005_080 0.1059598834 - - PREDICTED: uncharacterized protein LOC105649750 isoform X1 [Jatropha curcas]
4 Hb_001232_010 0.1078784148 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
5 Hb_015026_110 0.1083391333 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
6 Hb_002477_090 0.1154245767 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
7 Hb_005048_100 0.1172972787 - - secretory carrier membrane protein, putative [Ricinus communis]
8 Hb_001006_340 0.1189275387 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
9 Hb_003498_130 0.1200823676 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
10 Hb_000684_290 0.1209861609 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
11 Hb_000950_060 0.1246221013 - - PREDICTED: CCAAT/enhancer-binding protein zeta [Jatropha curcas]
12 Hb_005333_050 0.1258788987 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
13 Hb_000900_030 0.1261410772 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
14 Hb_000340_490 0.1270490208 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
15 Hb_001062_010 0.1295612996 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
16 Hb_003647_130 0.1314367324 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
17 Hb_025193_040 0.1324100713 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
18 Hb_004934_050 0.1334518791 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
19 Hb_002053_150 0.1334547937 - - PREDICTED: small nuclear ribonucleoprotein-associated protein B' [Jatropha curcas]
20 Hb_077562_030 0.1334679488 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010021_010 Hb_010021_010 Hb_000106_120 Hb_000106_120 Hb_010021_010--Hb_000106_120 Hb_002005_080 Hb_002005_080 Hb_010021_010--Hb_002005_080 Hb_001232_010 Hb_001232_010 Hb_010021_010--Hb_001232_010 Hb_015026_110 Hb_015026_110 Hb_010021_010--Hb_015026_110 Hb_002477_090 Hb_002477_090 Hb_010021_010--Hb_002477_090 Hb_005048_100 Hb_005048_100 Hb_010021_010--Hb_005048_100 Hb_000106_120--Hb_002477_090 Hb_000340_490 Hb_000340_490 Hb_000106_120--Hb_000340_490 Hb_006909_010 Hb_006909_010 Hb_000106_120--Hb_006909_010 Hb_002639_080 Hb_002639_080 Hb_000106_120--Hb_002639_080 Hb_000684_290 Hb_000684_290 Hb_000106_120--Hb_000684_290 Hb_000069_120 Hb_000069_120 Hb_000106_120--Hb_000069_120 Hb_002005_080--Hb_000684_290 Hb_001006_340 Hb_001006_340 Hb_002005_080--Hb_001006_340 Hb_041327_010 Hb_041327_010 Hb_002005_080--Hb_041327_010 Hb_002005_080--Hb_002639_080 Hb_000083_270 Hb_000083_270 Hb_002005_080--Hb_000083_270 Hb_003498_130 Hb_003498_130 Hb_002005_080--Hb_003498_130 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_015026_110--Hb_005048_100 Hb_015026_110--Hb_001232_010 Hb_000900_030 Hb_000900_030 Hb_015026_110--Hb_000900_030 Hb_001529_040 Hb_001529_040 Hb_015026_110--Hb_001529_040 Hb_015026_110--Hb_002477_090 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060 Hb_002005_090 Hb_002005_090 Hb_005048_100--Hb_002005_090 Hb_002217_430 Hb_002217_430 Hb_005048_100--Hb_002217_430 Hb_025194_020 Hb_025194_020 Hb_005048_100--Hb_025194_020 Hb_001301_170 Hb_001301_170 Hb_005048_100--Hb_001301_170 Hb_005048_100--Hb_002477_090 Hb_005048_100--Hb_002217_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.434859 0.623544 0.363363 0.317095 0.813368 0.508919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307713 0.423359 0.541763 1.64617 0.720842

CAGE analysis