Hb_015026_110

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig15026: 69331-72152
Sequence    

Annotation

kegg
ID cic:CICLE_v10024814mg
description hypothetical protein
nr
ID CDP14717.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A068V2F6
description Coffea canephora DH200=94 genomic scaffold, scaffold_91 OS=Coffea canephora GN=GSCOC_T00042139001 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein at4g27190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_110 0.0 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
2 Hb_005048_100 0.0992041809 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_010021_010 0.1083391333 - - unnamed protein product [Coffea canephora]
4 Hb_001232_010 0.1165528993 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
5 Hb_000900_030 0.1185487854 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
6 Hb_001529_040 0.1314710128 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
7 Hb_002477_090 0.1351741915 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
8 Hb_002217_030 0.1354089347 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
9 Hb_025194_020 0.1361220134 - - PREDICTED: uncharacterized protein C1F8.04c-like isoform X1 [Jatropha curcas]
10 Hb_000006_040 0.137981867 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_033152_020 0.1411499502 - - hypothetical protein VITISV_000649 [Vitis vinifera]
12 Hb_002631_170 0.1424616079 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
13 Hb_000575_120 0.1425503424 - - hypothetical protein POPTR_0011s02060g [Populus trichocarpa]
14 Hb_001062_010 0.1429806205 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
15 Hb_011928_020 0.1433760819 - - something about silencing protein sas10, putative [Ricinus communis]
16 Hb_001006_340 0.144167819 - - PREDICTED: sodium/hydrogen exchanger 7-like [Malus domestica]
17 Hb_004267_040 0.145538611 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
18 Hb_003645_060 0.1460142267 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
19 Hb_001301_170 0.1462990621 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
20 Hb_111889_010 0.1470242568 - - PREDICTED: DNA ligase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_015026_110 Hb_015026_110 Hb_005048_100 Hb_005048_100 Hb_015026_110--Hb_005048_100 Hb_010021_010 Hb_010021_010 Hb_015026_110--Hb_010021_010 Hb_001232_010 Hb_001232_010 Hb_015026_110--Hb_001232_010 Hb_000900_030 Hb_000900_030 Hb_015026_110--Hb_000900_030 Hb_001529_040 Hb_001529_040 Hb_015026_110--Hb_001529_040 Hb_002477_090 Hb_002477_090 Hb_015026_110--Hb_002477_090 Hb_002005_090 Hb_002005_090 Hb_005048_100--Hb_002005_090 Hb_002217_430 Hb_002217_430 Hb_005048_100--Hb_002217_430 Hb_025194_020 Hb_025194_020 Hb_005048_100--Hb_025194_020 Hb_001301_170 Hb_001301_170 Hb_005048_100--Hb_001301_170 Hb_005048_100--Hb_002477_090 Hb_002217_030 Hb_002217_030 Hb_005048_100--Hb_002217_030 Hb_000106_120 Hb_000106_120 Hb_010021_010--Hb_000106_120 Hb_002005_080 Hb_002005_080 Hb_010021_010--Hb_002005_080 Hb_010021_010--Hb_001232_010 Hb_010021_010--Hb_002477_090 Hb_010021_010--Hb_005048_100 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_001232_010--Hb_002217_030 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_001062_010 Hb_001062_010 Hb_000900_030--Hb_001062_010 Hb_009175_020 Hb_009175_020 Hb_000900_030--Hb_009175_020 Hb_009486_180 Hb_009486_180 Hb_000900_030--Hb_009486_180 Hb_000441_120 Hb_000441_120 Hb_000900_030--Hb_000441_120 Hb_004267_040 Hb_004267_040 Hb_000900_030--Hb_004267_040 Hb_000011_230 Hb_000011_230 Hb_000900_030--Hb_000011_230 Hb_003060_060 Hb_003060_060 Hb_001529_040--Hb_003060_060 Hb_000395_070 Hb_000395_070 Hb_001529_040--Hb_000395_070 Hb_001913_060 Hb_001913_060 Hb_001529_040--Hb_001913_060 Hb_000494_070 Hb_000494_070 Hb_001529_040--Hb_000494_070 Hb_002740_110 Hb_002740_110 Hb_001529_040--Hb_002740_110 Hb_000740_100 Hb_000740_100 Hb_001529_040--Hb_000740_100 Hb_003913_070 Hb_003913_070 Hb_002477_090--Hb_003913_070 Hb_004934_050 Hb_004934_050 Hb_002477_090--Hb_004934_050 Hb_002477_090--Hb_001761_130 Hb_001123_050 Hb_001123_050 Hb_002477_090--Hb_001123_050 Hb_002477_090--Hb_000106_120 Hb_003058_060 Hb_003058_060 Hb_002477_090--Hb_003058_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.134777 0.2941 0.251532 0.144464 0.548685 0.309971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165947 0.235051 0.249231 0.673844 0.222339

CAGE analysis